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D8SVT1

- D8SVT1_SELML

UniProt

D8SVT1 - D8SVT1_SELML

Protein
Submitted name:

Putative uncharacterized protein

Gene

SELMODRAFT_446978

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. single-stranded RNA binding Source: EnsemblPlants/Gramene

    GO - Biological processi

    1. DNA mediated transformation Source: EnsemblPlants/Gramene
    2. histone methylation Source: EnsemblPlants/Gramene
    3. leaf morphogenesis Source: EnsemblPlants/Gramene
    4. negative regulation of molecular function, epigenetic Source: EnsemblPlants/Gramene
    5. regulation of gene expression by genetic imprinting Source: EnsemblPlants/Gramene
    6. vegetative to reproductive phase transition of meristem Source: EnsemblPlants/Gramene

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    ORF Names:SELMODRAFT_446978Imported
    OrganismiSelaginella moellendorffii (Spikemoss)Imported
    Taxonomic identifieri88036 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
    ProteomesiUP000001514: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. PcG protein complex Source: InterPro

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    KOiK11430.

    Family and domain databases

    InterProiIPR026489. CXC_dom.
    IPR025778. Hist-Lys_N-MeTrfase_EZ.
    IPR001214. SET_dom.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    [Graphical view]
    SMARTiSM00317. SET. 1 hit.
    [Graphical view]
    PROSITEiPS51633. CXC. 1 hit.
    PS51576. SAM_MT43_EZ. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8SVT1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQSMEEGEAS GKVSMAALSA TFTRLKKQVA FERQAYVKAR MDANSERLQG    50
    FCTHLLALSS SRAVNNRNHA DNDMLNTRIQ KALNKLGTDP AAADQQCGSQ 100
    DDSSAPILFN NSGGKSIVKP VRLQTVQKTP PYTTWIFLDR NQRMAEDQSV 150
    VGRRRIYYDS AENEALICSD SEEEQVEEEE EKRDFSKGDD FLIRATVQEH 200
    GLSKMMFKAL ADCLDAKPSE IEARYEILAK DGDKLKSEEK HDLLSAMDSF 250
    DNLFCRRCLV FDCRLHGCSQ PVIIPFDKQT PLNKTGELPS VPCGPCCFHL 300
    PRLSSHHDAT SSGVESKPVP VESTAPAIEK SWQVSDSKDK GVATEPVAKT 350
    VDKPPEAPKK SFKDKSVTAL RRLLLKRKAT RHTDDDTNEA RKKHHVEGSH 400
    AEVGDGSGNA TRGENTGASM YLKKLVSKKL YAQRKWKGSQ ITTVKRPPPV 450
    IKEPEDVMQS ISKNLTLYDS NWNTLEKDLY ETGLQIFGRD SCLISRNLLR 500
    GMKSCAEVGE FMQLEAAVNW KLNEETKLQQ DGNTVIEDAT EIDRSRSRLY 550
    NGRRRGRVRR LKYTWKSVGY PAIRKRLVDG KDGCRQYTPC SCSESCGKQC 600
    SCHRNGTCCE KYCGCSKNCK NRFRGCHCAK SQCSSRQCPC FAAGRECDPD 650
    VCRNCWIGCG DGSQGGPPAR GDSYECRNMK LLLKQQQRVL LGRSDVAGWG 700
    AFLKTPVNKH DYLGEYTGEL ISHREADKRG KIYDRENSSF LFNLNDQYVL 750
    DACRKGDKLK FANHSPNPNC YAKVIMVAGD HRVGIFAKER ISAGEELFYD 800
    YRYEADRAPP WARKPEDGQK NDEAASGSGR AQKTA 835
    Length:835
    Mass (Da):93,547
    Last modified:October 5, 2010 - v1
    Checksum:i0BBC1B6259FA826F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377646 Genomic DNA. Translation: EFJ11553.1.
    RefSeqiXP_002987466.1. XM_002987420.1.

    Genome annotation databases

    EnsemblPlantsiEFJ11553; EFJ11553; SELMODRAFT_446978.
    GeneIDi9628852.
    KEGGismo:SELMODRAFT_446978.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377646 Genomic DNA. Translation: EFJ11553.1 .
    RefSeqi XP_002987466.1. XM_002987420.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EFJ11553 ; EFJ11553 ; SELMODRAFT_446978 .
    GeneIDi 9628852.
    KEGGi smo:SELMODRAFT_446978.

    Phylogenomic databases

    KOi K11430.

    Family and domain databases

    InterProi IPR026489. CXC_dom.
    IPR025778. Hist-Lys_N-MeTrfase_EZ.
    IPR001214. SET_dom.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    [Graphical view ]
    SMARTi SM00317. SET. 1 hit.
    [Graphical view ]
    PROSITEi PS51633. CXC. 1 hit.
    PS51576. SAM_MT43_EZ. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
      Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
      , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
      Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiD8SVT1_SELML
    AccessioniPrimary (citable) accession number: D8SVT1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3