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D8SLK4 (D8SLK4_SELML) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:SELMODRAFT_119719 EMBL EFJ14788.1
OrganismSelaginella moellendorffii (Spikemoss) [Complete proteome]
Taxonomic identifier88036 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella

Protein attributes

Sequence length638 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
D8SLK4 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 25CCFE2B350E07FE

FASTA63871,636
        10         20         30         40         50         60 
MDALRSKPFD PRKAAFWEDK EPVPFLFFAR VMDMISNESG RLVMTEILCN AFRTVIATTP 

        70         80         90        100        110        120 
QDLLPVVYLS ANKIAPAHDG IELGIGDASI IKALADAFGR KEDQIKSQMK ALGDLGLVAK 

       130        140        150        160        170        180 
ASRSTQRLMF KHPPLTCAKV LETFRSIAKE SGKDSQEKKR SRMKSLLVAA TDCEPQYLVR 

       190        200        210        220        230        240 
LLQAKLRVGL AEATVLVALA QAAVYAEQPP VSSSMLPGRL EEAAEIMKQT YSVLPIFEKI 

       250        260        270        280        290        300 
VPILLTDGIS KLPEVCAFTV GVPVGPMLAK PTKGVSEILD KFQNTVFTCE YKYDGERAQI 

       310        320        330        340        350        360 
HYFEDGRVEV YSRNAERNTG KFPDVTSSIS GYKKPEVSSF VMDCEIVAYD KESNKILPFQ 

       370        380        390        400        410        420 
VLSTRARKGV ILSDIKVKVL IFAFDLLYLN GRVLLQEQLV RRRELLYQSF IEKPGEFQFA 

       430        440        450        460        470        480 
TATNTKELEE IQSFLNDAIN HSCEGLIVKT LEKDATYEPA KRSNNWLKLK KDYMDTIGDS 

       490        500        510        520        530        540 
LDLVPIGAFH GRGKRVGVYG AFLLACYDPD KEEYQSICKI GTGFTEAVLE ERSNTLRKHV 

       550        560        570        580        590        600 
IDTPRPYYRY GETLAVDVWF DPVEVWEVKA ADLSISPVHK AAYGELETSK GISLRFPRLL 

       610        620        630 
RMREDKKPEQ ATSSDQVVDL YRAQKINHRS TKNEDDSS 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL377626 Genomic DNA. Translation: EFJ14788.1.
RefSeqXP_002984278.1. XM_002984232.1.
UniGeneSmo.16288.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEFJ14788; EFJ14788; SELMODRAFT_119719.
GeneID9643917.
KEGGsmo:SELMODRAFT_119719.

Phylogenomic databases

KOK10747.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8SLK4_SELML
AccessionPrimary (citable) accession number: D8SLK4
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)