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Protein

DNA ligase

Gene

SELMODRAFT_119719

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotation
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SELMODRAFT_119719Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiopsidaSelaginellalesSelaginellaceaeSelaginella
Proteomesi
  • UP000001514 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi88036.EFJ14788

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini372 – 508DNA_LIGASE_A3InterPro annotationAdd BLAST137

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0967 Eukaryota
COG1793 LUCA
InParanoidiD8SLK4
KOiK10747
OMAiRHAERNT
OrthoDBiEOG0936033M

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

D8SLK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDALRSKPFD PRKAAFWEDK EPVPFLFFAR VMDMISNESG RLVMTEILCN
60 70 80 90 100
AFRTVIATTP QDLLPVVYLS ANKIAPAHDG IELGIGDASI IKALADAFGR
110 120 130 140 150
KEDQIKSQMK ALGDLGLVAK ASRSTQRLMF KHPPLTCAKV LETFRSIAKE
160 170 180 190 200
SGKDSQEKKR SRMKSLLVAA TDCEPQYLVR LLQAKLRVGL AEATVLVALA
210 220 230 240 250
QAAVYAEQPP VSSSMLPGRL EEAAEIMKQT YSVLPIFEKI VPILLTDGIS
260 270 280 290 300
KLPEVCAFTV GVPVGPMLAK PTKGVSEILD KFQNTVFTCE YKYDGERAQI
310 320 330 340 350
HYFEDGRVEV YSRNAERNTG KFPDVTSSIS GYKKPEVSSF VMDCEIVAYD
360 370 380 390 400
KESNKILPFQ VLSTRARKGV ILSDIKVKVL IFAFDLLYLN GRVLLQEQLV
410 420 430 440 450
RRRELLYQSF IEKPGEFQFA TATNTKELEE IQSFLNDAIN HSCEGLIVKT
460 470 480 490 500
LEKDATYEPA KRSNNWLKLK KDYMDTIGDS LDLVPIGAFH GRGKRVGVYG
510 520 530 540 550
AFLLACYDPD KEEYQSICKI GTGFTEAVLE ERSNTLRKHV IDTPRPYYRY
560 570 580 590 600
GETLAVDVWF DPVEVWEVKA ADLSISPVHK AAYGELETSK GISLRFPRLL
610 620 630
RMREDKKPEQ ATSSDQVVDL YRAQKINHRS TKNEDDSS
Length:638
Mass (Da):71,636
Last modified:October 5, 2010 - v1
Checksum:i25CCFE2B350E07FE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377626 Genomic DNA Translation: EFJ14788.1
RefSeqiXP_002984278.1, XM_002984232.1
UniGeneiSmo.16288

Genome annotation databases

EnsemblPlantsiEFJ14788; EFJ14788; SELMODRAFT_119719
GeneIDi9643917
GrameneiEFJ14788; EFJ14788; SELMODRAFT_119719
KEGGismo:SELMODRAFT_119719

Similar proteinsi

Entry informationi

Entry nameiD8SLK4_SELML
AccessioniPrimary (citable) accession number: D8SLK4
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 36 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health