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D8SJP8 (D8SJP8_SELML) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:SELMODRAFT_422836 EMBL EFJ15400.1
OrganismSelaginella moellendorffii (Spikemoss) [Complete proteome]
Taxonomic identifier88036 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella

Protein attributes

Sequence length1172 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
D8SJP8 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 783D80308F329333

FASTA1,172132,104
        10         20         30         40         50         60 
MGENTVRFSA VSDMLERISK SKKLPVKRKT FRTFLDHFYT DREYFSVMRL VLPELDRERG 

        70         80         90        100        110        120 
NYGLKESVLA KCLADALGLA KGSSDADKLV NWRKGGSSVG KNAGNFALVA AEIVGSRQSH 

       130        140        150        160        170        180 
TSGGLTVKRV NELLDQLAEV KSREEKSKVL AEFINKTNPV EMKWLVMIIL KDLKLGISEK 

       190        200        210        220        230        240 
TVFKEFHPDA DEVYNKTCDL KLVCEKLVDP KVRFKRQDIE VGKAVRPQLA SRVKNAEDAW 

       250        260        270        280        290        300 
KRMRGKRVIA ECKFDGDRCQ VHKDGNEVHF FSRSSIDHVE FAAAMSSVIC ENVKASKCIL 

       310        320        330        340        350        360 
DGEMVVWNRV TNKFAEFGTI HAVAKNAKDG VQSDEQLCYI VFDILYLDDC SVIHQPLCER 

       370        380        390        400        410        420 
QKLLEQKVTT VPGRLELLQP DRRNCGGQLW SITPQSAADV EKFFLMTVDN REEGIVVKDF 

       430        440        450        460        470        480 
DSKWEPGDRS GKWMKLKPDY VKESEMDVLI IGGYYGSGRR GGDVAQFLLG IAERPASGYP 

       490        500        510        520        530        540 
TKFHSFCKVG TGLSDEECRV LVDKLRPYFR KYDKNTKPPS YYVVTNNAKE RPDVWIEQPD 

       550        560        570        580        590        600 
KSVLLEVKSD IRKIKSEVFA SPYSLRFPRV TRVRYDKPWN ECLDIQELVR MVAEDAGAGV 

       610        620        630        640        650        660 
NGDGDGGRKK KQERAPKKKA PKLPLLAPHM QQTDVSGVKK VSDMLSGLVF FLVNFKLEEK 

       670        680        690        700        710        720 
ERFHKLVAEY GGKFSMNLNG DVTHVLAESP KGLLYETATK RGDVIHSSWF MDSIAAKELL 

       730        740        750        760        770        780 
PLRPKYMLHL SYKTRETLKD TLDEFGDHYF VEVDEADMKQ LFGRMRVEDL SVNEKDVDEH 

       790        800        810        820        830        840 
RGSLGDRKNI FEGCSFYFYY PREAAVADEA MIAGVVLRRL EVEVELRKGA VKPSLAGATH 

       850        860        870        880        890        900 
MIVFWDSERD HSEAGLSFSE NKLVSSKKLR VLSHRWLEEA LRRDSVPPED DYDVRQALGS 

       910        920        930        940        950        960 
RLVEESPPRQ EEEPELLKEN SEHEAGDEEQ DEERVSVFDT LVLEEMDGPE NEELPPKKKR 

       970        980        990       1000       1010       1020 
HLQGMATPTL AKTLTLPTTS SSLDLWPTTQ EAGANPTLVI SETLKLPSFE PQKLAACSET 

      1030       1040       1050       1060       1070       1080 
LKLPSLEPRK LAACSETLKL PETPPATVIT ETVKLPSFEP DKAFDNLLAD FAFLPSITRE 

      1090       1100       1110       1120       1130       1140 
APAKGFAAPQ QNKPRIVQEE VAKEDTAMKK SKASYKIEVP VEGFAGGFAA PQRNEPGAFQ 

      1150       1160       1170 
ENGSSSREEI AMPMPAKKKN KTSLKDVVRN LL 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL377623 Genomic DNA. Translation: EFJ15400.1.
RefSeqXP_002983499.1. XM_002983453.1.

3D structure databases

ProteinModelPortalD8SJP8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEFJ15400; EFJ15400; SELMODRAFT_422836.
GeneID9655059.
KEGGsmo:SELMODRAFT_422836.

Phylogenomic databases

KOK10777.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8SJP8_SELML
AccessionPrimary (citable) accession number: D8SJP8
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)