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Protein

DNA ligase

Gene

SELMODRAFT_422836

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SELMODRAFT_422836Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD8SJP8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD8SJP8.
KOiK10777.
OMAiGTHIVRM.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8SJP8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGENTVRFSA VSDMLERISK SKKLPVKRKT FRTFLDHFYT DREYFSVMRL
60 70 80 90 100
VLPELDRERG NYGLKESVLA KCLADALGLA KGSSDADKLV NWRKGGSSVG
110 120 130 140 150
KNAGNFALVA AEIVGSRQSH TSGGLTVKRV NELLDQLAEV KSREEKSKVL
160 170 180 190 200
AEFINKTNPV EMKWLVMIIL KDLKLGISEK TVFKEFHPDA DEVYNKTCDL
210 220 230 240 250
KLVCEKLVDP KVRFKRQDIE VGKAVRPQLA SRVKNAEDAW KRMRGKRVIA
260 270 280 290 300
ECKFDGDRCQ VHKDGNEVHF FSRSSIDHVE FAAAMSSVIC ENVKASKCIL
310 320 330 340 350
DGEMVVWNRV TNKFAEFGTI HAVAKNAKDG VQSDEQLCYI VFDILYLDDC
360 370 380 390 400
SVIHQPLCER QKLLEQKVTT VPGRLELLQP DRRNCGGQLW SITPQSAADV
410 420 430 440 450
EKFFLMTVDN REEGIVVKDF DSKWEPGDRS GKWMKLKPDY VKESEMDVLI
460 470 480 490 500
IGGYYGSGRR GGDVAQFLLG IAERPASGYP TKFHSFCKVG TGLSDEECRV
510 520 530 540 550
LVDKLRPYFR KYDKNTKPPS YYVVTNNAKE RPDVWIEQPD KSVLLEVKSD
560 570 580 590 600
IRKIKSEVFA SPYSLRFPRV TRVRYDKPWN ECLDIQELVR MVAEDAGAGV
610 620 630 640 650
NGDGDGGRKK KQERAPKKKA PKLPLLAPHM QQTDVSGVKK VSDMLSGLVF
660 670 680 690 700
FLVNFKLEEK ERFHKLVAEY GGKFSMNLNG DVTHVLAESP KGLLYETATK
710 720 730 740 750
RGDVIHSSWF MDSIAAKELL PLRPKYMLHL SYKTRETLKD TLDEFGDHYF
760 770 780 790 800
VEVDEADMKQ LFGRMRVEDL SVNEKDVDEH RGSLGDRKNI FEGCSFYFYY
810 820 830 840 850
PREAAVADEA MIAGVVLRRL EVEVELRKGA VKPSLAGATH MIVFWDSERD
860 870 880 890 900
HSEAGLSFSE NKLVSSKKLR VLSHRWLEEA LRRDSVPPED DYDVRQALGS
910 920 930 940 950
RLVEESPPRQ EEEPELLKEN SEHEAGDEEQ DEERVSVFDT LVLEEMDGPE
960 970 980 990 1000
NEELPPKKKR HLQGMATPTL AKTLTLPTTS SSLDLWPTTQ EAGANPTLVI
1010 1020 1030 1040 1050
SETLKLPSFE PQKLAACSET LKLPSLEPRK LAACSETLKL PETPPATVIT
1060 1070 1080 1090 1100
ETVKLPSFEP DKAFDNLLAD FAFLPSITRE APAKGFAAPQ QNKPRIVQEE
1110 1120 1130 1140 1150
VAKEDTAMKK SKASYKIEVP VEGFAGGFAA PQRNEPGAFQ ENGSSSREEI
1160 1170
AMPMPAKKKN KTSLKDVVRN LL
Length:1,172
Mass (Da):132,104
Last modified:October 5, 2010 - v1
Checksum:i783D80308F329333
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377623 Genomic DNA. Translation: EFJ15400.1.
RefSeqiXP_002983499.1. XM_002983453.1.

Genome annotation databases

EnsemblPlantsiEFJ15400; EFJ15400; SELMODRAFT_422836.
GeneIDi9655059.
KEGGismo:SELMODRAFT_422836.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377623 Genomic DNA. Translation: EFJ15400.1.
RefSeqiXP_002983499.1. XM_002983453.1.

3D structure databases

ProteinModelPortaliD8SJP8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEFJ15400; EFJ15400; SELMODRAFT_422836.
GeneIDi9655059.
KEGGismo:SELMODRAFT_422836.

Phylogenomic databases

InParanoidiD8SJP8.
KOiK10777.
OMAiGTHIVRM.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8SJP8_SELML
AccessioniPrimary (citable) accession number: D8SJP8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 7, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.