SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

D8SJP8

- D8SJP8_SELML

UniProt

D8SJP8 - D8SJP8_SELML

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
DNA ligase
Gene
SELMODRAFT_422836
Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
  4. double-strand break repair Source: EnsemblPlants/Gramene
  5. response to X-ray Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SELMODRAFT_422836Imported
OrganismiSelaginella moellendorffii (Spikemoss)
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliD8SJP8.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10777.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8SJP8-1 [UniParc]FASTAAdd to Basket

« Hide

MGENTVRFSA VSDMLERISK SKKLPVKRKT FRTFLDHFYT DREYFSVMRL     50
VLPELDRERG NYGLKESVLA KCLADALGLA KGSSDADKLV NWRKGGSSVG 100
KNAGNFALVA AEIVGSRQSH TSGGLTVKRV NELLDQLAEV KSREEKSKVL 150
AEFINKTNPV EMKWLVMIIL KDLKLGISEK TVFKEFHPDA DEVYNKTCDL 200
KLVCEKLVDP KVRFKRQDIE VGKAVRPQLA SRVKNAEDAW KRMRGKRVIA 250
ECKFDGDRCQ VHKDGNEVHF FSRSSIDHVE FAAAMSSVIC ENVKASKCIL 300
DGEMVVWNRV TNKFAEFGTI HAVAKNAKDG VQSDEQLCYI VFDILYLDDC 350
SVIHQPLCER QKLLEQKVTT VPGRLELLQP DRRNCGGQLW SITPQSAADV 400
EKFFLMTVDN REEGIVVKDF DSKWEPGDRS GKWMKLKPDY VKESEMDVLI 450
IGGYYGSGRR GGDVAQFLLG IAERPASGYP TKFHSFCKVG TGLSDEECRV 500
LVDKLRPYFR KYDKNTKPPS YYVVTNNAKE RPDVWIEQPD KSVLLEVKSD 550
IRKIKSEVFA SPYSLRFPRV TRVRYDKPWN ECLDIQELVR MVAEDAGAGV 600
NGDGDGGRKK KQERAPKKKA PKLPLLAPHM QQTDVSGVKK VSDMLSGLVF 650
FLVNFKLEEK ERFHKLVAEY GGKFSMNLNG DVTHVLAESP KGLLYETATK 700
RGDVIHSSWF MDSIAAKELL PLRPKYMLHL SYKTRETLKD TLDEFGDHYF 750
VEVDEADMKQ LFGRMRVEDL SVNEKDVDEH RGSLGDRKNI FEGCSFYFYY 800
PREAAVADEA MIAGVVLRRL EVEVELRKGA VKPSLAGATH MIVFWDSERD 850
HSEAGLSFSE NKLVSSKKLR VLSHRWLEEA LRRDSVPPED DYDVRQALGS 900
RLVEESPPRQ EEEPELLKEN SEHEAGDEEQ DEERVSVFDT LVLEEMDGPE 950
NEELPPKKKR HLQGMATPTL AKTLTLPTTS SSLDLWPTTQ EAGANPTLVI 1000
SETLKLPSFE PQKLAACSET LKLPSLEPRK LAACSETLKL PETPPATVIT 1050
ETVKLPSFEP DKAFDNLLAD FAFLPSITRE APAKGFAAPQ QNKPRIVQEE 1100
VAKEDTAMKK SKASYKIEVP VEGFAGGFAA PQRNEPGAFQ ENGSSSREEI 1150
AMPMPAKKKN KTSLKDVVRN LL 1172
Length:1,172
Mass (Da):132,104
Last modified:October 5, 2010 - v1
Checksum:i783D80308F329333
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377623 Genomic DNA. Translation: EFJ15400.1.
RefSeqiXP_002983499.1. XM_002983453.1.

Genome annotation databases

EnsemblPlantsiEFJ15400; EFJ15400; SELMODRAFT_422836.
GeneIDi9655059.
KEGGismo:SELMODRAFT_422836.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377623 Genomic DNA. Translation: EFJ15400.1 .
RefSeqi XP_002983499.1. XM_002983453.1.

3D structure databases

ProteinModelPortali D8SJP8.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EFJ15400 ; EFJ15400 ; SELMODRAFT_422836 .
GeneIDi 9655059.
KEGGi smo:SELMODRAFT_422836.

Phylogenomic databases

KOi K10777.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF12738. PTCB-BRCT. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8SJP8_SELML
AccessioniPrimary (citable) accession number: D8SJP8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi