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Protein
Submitted name:

Putative uncharacterized protein

Gene

SELMODRAFT_111991

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. 2-isopropylmalate synthase activity Source: InterPro

GO - Biological processi

  1. leucine biosynthetic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:SELMODRAFT_111991Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD8S9Y1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiD8S9Y1.
KOiK01649.
OMAiVMAITED.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_01025. LeuA_type1.
InterProiIPR013709. 2-isopropylmalate_synth_dimer.
IPR002034. AIPM/Hcit_synth_CS.
IPR013785. Aldolase_TIM.
IPR005671. LeuA_bact_synth.
IPR000891. PYR_CT.
[Graphical view]
PfamiPF00682. HMGL-like. 1 hit.
PF08502. LeuA_dimer. 1 hit.
[Graphical view]
SMARTiSM00917. LeuA_dimer. 1 hit.
[Graphical view]
SUPFAMiSSF110921. SSF110921. 1 hit.
TIGRFAMsiTIGR00973. leuA_bact. 1 hit.
PROSITEiPS00815. AIPM_HOMOCIT_SYNTH_1. 1 hit.
PS50991. PYR_CT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8S9Y1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDHRVIAPAP GSPAFQCKLR KSPSPSPAPW KCRVLASSSS ERQFLQRKRP
60 70 80 90 100
IYVPSRIDDP SYVRIFDTTL RDGEQSPGAT LTSKEKLDIA RQLAKLGVDI
110 120 130 140 150
IEAGFPIASP DDLLAVKGIA LDVGNRVDDD GYVPVICGLS RCNKADIAAA
160 170 180 190 200
WEAVSHALRP RIHTFIATSE IHMKHKLRKS PDEVVQIATD MVGYAKSLGC
210 220 230 240 250
QDIEFSPEDA GRSDPEFLYR ILAEVIKAGA TTLNIPDTVG YTLPSEFGRL
260 270 280 290 300
IAMIKENTPG SQNVVISTHC QNDLGLATAN TLAGAYAGAR QLEVTINGIG
310 320 330 340 350
ERAGNASLEE VVMAIRCRGD EQLNGLHTGI KPKHIAVTSR MVSDYTGMTV
360 370 380 390 400
QPHKAIVGAN AFAHESGIHQ DGMLKFKGTY EIMCPEDIGL VRADEAGIVL
410 420 430 440 450
GKHSGRHALK TRLSQLGYEL ESKKLDDVFK RFKAVADKKK SLSDVDLEAL
460 470 480 490 500
LSDEVFQPEV VWALLDLQVV CGTLGLSTAT VKLSGPDNIQ RVGTSIGTGP
510 520 530 540 550
VDAAYKAVDS IVQIPVTLLE YSMNAVTEGI DAIANTRVVI RAENSTPVTH
560 570 580 590 600
AQSTEPVQRS FSGSGASEDV TVSSVRAYVS ALNKVIGFSK AVPSSESSVS
610
ATQATTVATK
Length:610
Mass (Da):65,396
Last modified:October 5, 2010 - v1
Checksum:i0E0983ECC392E218
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377608 Genomic DNA. Translation: EFJ18905.1.
RefSeqiXP_002980035.1. XM_002979989.1.
UniGeneiSmo.15089.

Genome annotation databases

EnsemblPlantsiEFJ18905; EFJ18905; SELMODRAFT_111991.
GeneIDi9647364.
KEGGismo:SELMODRAFT_111991.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377608 Genomic DNA. Translation: EFJ18905.1.
RefSeqiXP_002980035.1. XM_002979989.1.
UniGeneiSmo.15089.

3D structure databases

ProteinModelPortaliD8S9Y1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEFJ18905; EFJ18905; SELMODRAFT_111991.
GeneIDi9647364.
KEGGismo:SELMODRAFT_111991.

Phylogenomic databases

InParanoidiD8S9Y1.
KOiK01649.
OMAiVMAITED.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_01025. LeuA_type1.
InterProiIPR013709. 2-isopropylmalate_synth_dimer.
IPR002034. AIPM/Hcit_synth_CS.
IPR013785. Aldolase_TIM.
IPR005671. LeuA_bact_synth.
IPR000891. PYR_CT.
[Graphical view]
PfamiPF00682. HMGL-like. 1 hit.
PF08502. LeuA_dimer. 1 hit.
[Graphical view]
SMARTiSM00917. LeuA_dimer. 1 hit.
[Graphical view]
SUPFAMiSSF110921. SSF110921. 1 hit.
TIGRFAMsiTIGR00973. leuA_bact. 1 hit.
PROSITEiPS00815. AIPM_HOMOCIT_SYNTH_1. 1 hit.
PS50991. PYR_CT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8S9Y1_SELML
AccessioniPrimary (citable) accession number: D8S9Y1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 7, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.