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Protein
Submitted name:

Putative uncharacterized protein

Gene

SELMODRAFT_110614

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:SELMODRAFT_110614Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD8S7J7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiD8S7J7.
KOiK11407.
OMAiDERMCAH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PRINTSiPR01270. HDASUPER.

Sequencei

Sequence statusi: Fragment.

D8S7J7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
RAMAVGLVYD RRMCAHRDPF NKLHPEQPAR ITAIWKRLED AGVLDRCVRV
60 70 80 90 100
DARPATAEEL ATVHTDRHIE KMSSVSSRAY GKEGRAALAR RYNSIYFNDG
110 120 130 140 150
SSESALLAAG SVVELSLKVA RGELASAAAI VRPPGHHAEA DEAMGFCLFN
160 170 180 190 200
NVAVAAQILS SGKVSVAGSH KVLIVDWDVH HGNGTQNMFW QDPNVLYFSV
210 220 230 240 250
HRYDDGYFYP GGQEGNFDKV GGGAGAGFNI NVPWPRGGYS DADYVAVWEH
260 270 280 290 300
VLMPVAREFN PDIVLISGGF DSARGDPLGG CKLTPLGYSI MTQELMQLAG
310 320 330 340 350
GKIVLALEGG YNLESIAESY LACVQVLLGD IQSERHDIER AYESTWTIID
360 370 380 390 400
KVRQELCQYW PVLREKIEMP ASRSSPPKAF ERLTTEADAV EETHDGEVFV
410 420 430 440 450
RSETVEIVQI SVSSEVSSPH SPSPYIWYAT YGSNMWPARL MCYIQGGKVE
460 470 480 490 500
GIEVPGQGLL EKTPPLEDFW LSAPHRLFFG RERSLSWGNG GVAFLNPVPS
510 520 530 540 550
DGDNCHLRAY KITLEQFNGI LAQENRLDSM AASGLVSPSH FETLKSSPHI
560 570 580 590 600
VDFIENAWYG SVLYLGDKNG APILTITCSQ RDAKRFECGE LPTRAPSVAY
610 620 630
QNTLINGLLE KGDLSHEQIL AYVTSRAPRS
Length:630
Mass (Da):69,284
Last modified:October 5, 2010 - v1
Checksum:i59519DAABCBAAF3B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377605 Genomic DNA. Translation: EFJ19764.1.
RefSeqiXP_002979356.1. XM_002979310.1.

Genome annotation databases

EnsemblPlantsiEFJ19764; EFJ19764; SELMODRAFT_110614.
GeneIDi9660401.
KEGGismo:SELMODRAFT_110614.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377605 Genomic DNA. Translation: EFJ19764.1.
RefSeqiXP_002979356.1. XM_002979310.1.

3D structure databases

ProteinModelPortaliD8S7J7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEFJ19764; EFJ19764; SELMODRAFT_110614.
GeneIDi9660401.
KEGGismo:SELMODRAFT_110614.

Phylogenomic databases

InParanoidiD8S7J7.
KOiK11407.
OMAiDERMCAH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PRINTSiPR01270. HDASUPER.
ProtoNetiSearch...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8S7J7_SELML
AccessioniPrimary (citable) accession number: D8S7J7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 7, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.