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D8S4X1

- D8S4X1_SELML

UniProt

D8S4X1 - D8S4X1_SELML

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Protein
Submitted name:

Putative uncharacterized protein

Gene
SELMODRAFT_152569
Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: InterPro
  2. thiamine pyrophosphate binding Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:SELMODRAFT_152569Imported
OrganismiSelaginella moellendorffii (Spikemoss)
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Family & Domainsi

Phylogenomic databases

KOiK00164.

Family and domain databases

Gene3Di3.40.50.970. 2 hits.
InterProiIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

D8S4X1-1 [UniParc]FASTAAdd to Basket

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MQTAAASAPR SVPLSRLTDN FLDGTSSVYL EELQRAWEAD PKSVDESWDN    50
FFQNFTGKAA SSPGVSGQTI QESMRLLLLV RAYQVNGHMK AKLDPLGLDE 100
RVPPEDLNPA LYGFTEADLD REFFIGVWRM SGFLSENRPV QTLRAILKRL 150
EQAYCGTIGY EYMHISDREK CNWLREKIEQ HVPSKYSKER QITILDRLIW 200
GTKFENFLAQ KWTAKRFGLE GCETLIPGMK EQIDRAADLG VESVVIGMPH 250
RGRLNVLGNV VRKPLRQIFS EFAGGTKPAE SGYSGSGDVK YHLGTSYDRP 300
TRTGKHIHLS LVANPSHLEA VDPVVVGKTR AKQYYSDDYE RKKNMAILLH 350
GDGSFSGQGV VYETLHLSDL PNYTTGGTIH IVVNNQVAFT TDPRSSRSSP 400
YCTDVAKALN APIFHVNGDD VEAVVHACEL AAEWRCQFKA DVVVDIVCYR 450
RFGHNEIDEP SFTQPKMYQV IKNHPTSLEL YEKKLIESGQ ISEETVKKIH 500
DKVYGILSEE FESSKDYVPK TQDWLAAYWS GFKSPEQLSR LRNTGVKPEV 550
LKNVGKKITT LPPSFTAHRA IKRVYEQRAQ MIETGDGVDW ATAEALAFAT 600
LLAEGNHVRL SGQDVERGTF SHRHAVVHDQ ETGERYCPLD HVVTNQKEEM 650
FTVSNSSLSE FGVLGFELGY SMENPNSLVC WEAQFGDFSN GAQVIFDQFL 700
SSGEAKWLRQ TGLVCMLPHG YDGQGPEHSS ARLERFLQMS DDHPFVIPEM 750
EVSLRKQIQE CNWQVVNVTT PANYFHVLRR QLHRDFRKPL IIMSPKNLLR 800
HSSCRSNLSE FDDVQGHPGF DKQGTRFKRL IKDKNDHGTV EPEIRRLVLC 850
SGKVYYELDE ERERVGAKDV AICRVEQLCP VPYDLLQREL KRYPNADVVW 900
CQEEPMNMGA FSYIAPRLGT AMLSVNRGSF GDIKYVGRPP SAATATGFAA 950
VHKMEQTELV QKALQAQKM 969
Length:969
Mass (Da):109,484
Last modified:October 5, 2010 - v1
Checksum:i0C4D6FE589684BF4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377602 Genomic DNA. Translation: EFJ20348.1.
RefSeqiXP_002978362.1. XM_002978316.1.
UniGeneiSmo.2540.

Genome annotation databases

EnsemblPlantsiEFJ20348; EFJ20348; SELMODRAFT_152569.
GeneIDi9653666.
KEGGismo:SELMODRAFT_152569.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377602 Genomic DNA. Translation: EFJ20348.1 .
RefSeqi XP_002978362.1. XM_002978316.1.
UniGenei Smo.2540.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EFJ20348 ; EFJ20348 ; SELMODRAFT_152569 .
GeneIDi 9653666.
KEGGi smo:SELMODRAFT_152569.

Phylogenomic databases

KOi K00164.

Family and domain databases

Gene3Di 3.40.50.970. 2 hits.
InterProi IPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view ]
PANTHERi PTHR23152. PTHR23152. 1 hit.
Pfami PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view ]
PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTi SM00861. Transket_pyr. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 2 hits.
TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8S4X1_SELML
AccessioniPrimary (citable) accession number: D8S4X1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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