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D8S4X1

- D8S4X1_SELML

UniProt

D8S4X1 - D8S4X1_SELML

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Protein
Submitted name:

Putative uncharacterized protein

Gene

SELMODRAFT_152569

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: InterPro
  2. thiamine pyrophosphate binding Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:SELMODRAFT_152569Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Family & Domainsi

Phylogenomic databases

InParanoidiD8S4X1.
KOiK00164.

Family and domain databases

Gene3Di3.40.50.970. 2 hits.
InterProiIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

D8S4X1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQTAAASAPR SVPLSRLTDN FLDGTSSVYL EELQRAWEAD PKSVDESWDN
60 70 80 90 100
FFQNFTGKAA SSPGVSGQTI QESMRLLLLV RAYQVNGHMK AKLDPLGLDE
110 120 130 140 150
RVPPEDLNPA LYGFTEADLD REFFIGVWRM SGFLSENRPV QTLRAILKRL
160 170 180 190 200
EQAYCGTIGY EYMHISDREK CNWLREKIEQ HVPSKYSKER QITILDRLIW
210 220 230 240 250
GTKFENFLAQ KWTAKRFGLE GCETLIPGMK EQIDRAADLG VESVVIGMPH
260 270 280 290 300
RGRLNVLGNV VRKPLRQIFS EFAGGTKPAE SGYSGSGDVK YHLGTSYDRP
310 320 330 340 350
TRTGKHIHLS LVANPSHLEA VDPVVVGKTR AKQYYSDDYE RKKNMAILLH
360 370 380 390 400
GDGSFSGQGV VYETLHLSDL PNYTTGGTIH IVVNNQVAFT TDPRSSRSSP
410 420 430 440 450
YCTDVAKALN APIFHVNGDD VEAVVHACEL AAEWRCQFKA DVVVDIVCYR
460 470 480 490 500
RFGHNEIDEP SFTQPKMYQV IKNHPTSLEL YEKKLIESGQ ISEETVKKIH
510 520 530 540 550
DKVYGILSEE FESSKDYVPK TQDWLAAYWS GFKSPEQLSR LRNTGVKPEV
560 570 580 590 600
LKNVGKKITT LPPSFTAHRA IKRVYEQRAQ MIETGDGVDW ATAEALAFAT
610 620 630 640 650
LLAEGNHVRL SGQDVERGTF SHRHAVVHDQ ETGERYCPLD HVVTNQKEEM
660 670 680 690 700
FTVSNSSLSE FGVLGFELGY SMENPNSLVC WEAQFGDFSN GAQVIFDQFL
710 720 730 740 750
SSGEAKWLRQ TGLVCMLPHG YDGQGPEHSS ARLERFLQMS DDHPFVIPEM
760 770 780 790 800
EVSLRKQIQE CNWQVVNVTT PANYFHVLRR QLHRDFRKPL IIMSPKNLLR
810 820 830 840 850
HSSCRSNLSE FDDVQGHPGF DKQGTRFKRL IKDKNDHGTV EPEIRRLVLC
860 870 880 890 900
SGKVYYELDE ERERVGAKDV AICRVEQLCP VPYDLLQREL KRYPNADVVW
910 920 930 940 950
CQEEPMNMGA FSYIAPRLGT AMLSVNRGSF GDIKYVGRPP SAATATGFAA
960
VHKMEQTELV QKALQAQKM
Length:969
Mass (Da):109,484
Last modified:October 5, 2010 - v1
Checksum:i0C4D6FE589684BF4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377602 Genomic DNA. Translation: EFJ20348.1.
RefSeqiXP_002978362.1. XM_002978316.1.
UniGeneiSmo.2540.

Genome annotation databases

EnsemblPlantsiEFJ20348; EFJ20348; SELMODRAFT_152569.
GeneIDi9653666.
KEGGismo:SELMODRAFT_152569.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377602 Genomic DNA. Translation: EFJ20348.1 .
RefSeqi XP_002978362.1. XM_002978316.1.
UniGenei Smo.2540.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EFJ20348 ; EFJ20348 ; SELMODRAFT_152569 .
GeneIDi 9653666.
KEGGi smo:SELMODRAFT_152569.

Phylogenomic databases

InParanoidi D8S4X1.
KOi K00164.

Family and domain databases

Gene3Di 3.40.50.970. 2 hits.
InterProi IPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view ]
PANTHERi PTHR23152. PTHR23152. 1 hit.
Pfami PF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view ]
PIRSFi PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTi SM00861. Transket_pyr. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 2 hits.
TIGRFAMsi TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8S4X1_SELML
AccessioniPrimary (citable) accession number: D8S4X1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 29, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3