D8S4X1 (D8S4X1_SELML) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EFJ20348.1

Gene names

ORF Names:

SELMODRAFT_152569 EMBL EFJ20348.1

Organism

Selaginella moellendorffii (Spikemoss) [Complete proteome]

Taxonomic identifier

88036 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Lycopodiophyta › Isoetopsida › Selaginellales › Selaginellaceae › Selaginella

Protein attributes

Sequence length	969 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	response to cadmium ion Inferred from electronic annotation. Source: EnsemblPlants/Gramene tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Cellular_component	mitochondrion Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	cobalt ion binding Inferred from electronic annotation. Source: EnsemblPlants/Gramene oxoglutarate dehydrogenase (succinyl-transferring) activity Inferred from electronic annotation. Source: InterPro thiamine pyrophosphate binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8S4X1 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 0C4D6FE589684BF4	FASTA	969	109,484
	10 20 30 40 50 60 MQTAAASAPR SVPLSRLTDN FLDGTSSVYL EELQRAWEAD PKSVDESWDN FFQNFTGKAA 70 80 90 100 110 120 SSPGVSGQTI QESMRLLLLV RAYQVNGHMK AKLDPLGLDE RVPPEDLNPA LYGFTEADLD 130 140 150 160 170 180 REFFIGVWRM SGFLSENRPV QTLRAILKRL EQAYCGTIGY EYMHISDREK CNWLREKIEQ 190 200 210 220 230 240 HVPSKYSKER QITILDRLIW GTKFENFLAQ KWTAKRFGLE GCETLIPGMK EQIDRAADLG 250 260 270 280 290 300 VESVVIGMPH RGRLNVLGNV VRKPLRQIFS EFAGGTKPAE SGYSGSGDVK YHLGTSYDRP 310 320 330 340 350 360 TRTGKHIHLS LVANPSHLEA VDPVVVGKTR AKQYYSDDYE RKKNMAILLH GDGSFSGQGV 370 380 390 400 410 420 VYETLHLSDL PNYTTGGTIH IVVNNQVAFT TDPRSSRSSP YCTDVAKALN APIFHVNGDD 430 440 450 460 470 480 VEAVVHACEL AAEWRCQFKA DVVVDIVCYR RFGHNEIDEP SFTQPKMYQV IKNHPTSLEL 490 500 510 520 530 540 YEKKLIESGQ ISEETVKKIH DKVYGILSEE FESSKDYVPK TQDWLAAYWS GFKSPEQLSR 550 560 570 580 590 600 LRNTGVKPEV LKNVGKKITT LPPSFTAHRA IKRVYEQRAQ MIETGDGVDW ATAEALAFAT 610 620 630 640 650 660 LLAEGNHVRL SGQDVERGTF SHRHAVVHDQ ETGERYCPLD HVVTNQKEEM FTVSNSSLSE 670 680 690 700 710 720 FGVLGFELGY SMENPNSLVC WEAQFGDFSN GAQVIFDQFL SSGEAKWLRQ TGLVCMLPHG 730 740 750 760 770 780 YDGQGPEHSS ARLERFLQMS DDHPFVIPEM EVSLRKQIQE CNWQVVNVTT PANYFHVLRR 790 800 810 820 830 840 QLHRDFRKPL IIMSPKNLLR HSSCRSNLSE FDDVQGHPGF DKQGTRFKRL IKDKNDHGTV 850 860 870 880 890 900 EPEIRRLVLC SGKVYYELDE ERERVGAKDV AICRVEQLCP VPYDLLQREL KRYPNADVVW 910 920 930 940 950 960 CQEEPMNMGA FSYIAPRLGT AMLSVNRGSF GDIKYVGRPP SAATATGFAA VHKMEQTELV QKALQAQKM

References

[1]

"The Selaginella genome identifies genetic changes associated with the evolution of vascular plants." Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C. , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Sorensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V. Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL377602 Genomic DNA. Translation: EFJ20348.1.
RefSeq	XP_002978362.1. XM_002978316.1.
UniGene	Smo.2540.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	EFJ20348; EFJ20348; SELMODRAFT_152569.
GeneID	9653666.
KEGG	smo:SELMODRAFT_152569.
Phylogenomic databases
KO	K00164.
Family and domain databases
InterPro	IPR011603. 2oxoglutarate_DH_E1. IPR001017. DH_E1. IPR005475. Transketolase-like_Pyr-bd. [Graphical view]
PANTHER	PTHR23152. PTHR23152. 1 hit.
Pfam	PF00676. E1_dh. 1 hit. PF02779. Transket_pyr. 1 hit. [Graphical view]
PIRSF	PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
TIGRFAMs	TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D8S4X1_SELML

Accession

Primary (citable) accession number: D8S4X1

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	October 3, 2012
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)