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D8RT63

- D8RT63_SELML

UniProt

D8RT63 - D8RT63_SELML

Protein

Superoxide dismutase [Cu-Zn]

Gene

SELMODRAFT_271798

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    Cofactori

    Binds 1 copper ion per subunit.UniRule annotation
    Binds 1 zinc ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    GO - Biological processi

    1. cellular response to copper ion Source: EnsemblPlants/Gramene
    2. cellular response to light intensity Source: EnsemblPlants/Gramene
    3. cellular response to ozone Source: EnsemblPlants/Gramene
    4. cellular response to salt stress Source: EnsemblPlants/Gramene
    5. cellular response to sucrose stimulus Source: EnsemblPlants/Gramene
    6. cellular response to UV-B Source: EnsemblPlants/Gramene
    7. defense response to bacterium Source: EnsemblPlants/Gramene
    8. gene silencing by miRNA Source: EnsemblPlants/Gramene
    9. response to iron ion Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    ORF Names:SELMODRAFT_271798Imported, SELMODRAFT_442405Imported
    OrganismiSelaginella moellendorffii (Spikemoss)Imported
    Taxonomic identifieri88036 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
    ProteomesiUP000001514: Unassembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    KOiK04565.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    PRINTSiPR00068. CUZNDISMTASE.
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8RT63-1 [UniParc]FASTAAdd to Basket

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    MAPLKAVAVL AGTGVSGVVS FVEDGEGTTV SGKITGLVAG EHGFHVHALG    50
    DTTNGCLSTG AHFNPNNLEH GDPSDKIRHA GDLGNVTAGP DGVAEFVIKD 100
    KQIPLAGANS IVGRAVVVHA DRDDLGKGGH ELSKSTGNAG GRLACGVIGL 150
    QASA 154
    Length:154
    Mass (Da):15,265
    Last modified:October 5, 2010 - v1
    Checksum:i750FC089BD161709
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377634 Genomic DNA. Translation: EFJ13179.1.
    GL377589 Genomic DNA. Translation: EFJ24454.1.
    RefSeqiXP_002974232.1. XM_002974186.1.
    XP_002985601.1. XM_002985555.1.
    UniGeneiSmo.15148.
    Smo.5976.

    Genome annotation databases

    EnsemblPlantsiEFJ13179; EFJ13179; SELMODRAFT_271798.
    EFJ24454; EFJ24454; SELMODRAFT_442405.
    GeneIDi9653800.
    9658067.
    KEGGismo:SELMODRAFT_271798.
    smo:SELMODRAFT_442405.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377634 Genomic DNA. Translation: EFJ13179.1 .
    GL377589 Genomic DNA. Translation: EFJ24454.1 .
    RefSeqi XP_002974232.1. XM_002974186.1.
    XP_002985601.1. XM_002985555.1.
    UniGenei Smo.15148.
    Smo.5976.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EFJ13179 ; EFJ13179 ; SELMODRAFT_271798 .
    EFJ24454 ; EFJ24454 ; SELMODRAFT_442405 .
    GeneIDi 9653800.
    9658067.
    KEGGi smo:SELMODRAFT_271798.
    smo:SELMODRAFT_442405.

    Phylogenomic databases

    KOi K04565.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    PRINTSi PR00068. CUZNDISMTASE.
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
      Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
      , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
      Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiD8RT63_SELML
    AccessioniPrimary (citable) accession number: D8RT63
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3