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D8RT63

- D8RT63_SELML

UniProt

D8RT63 - D8RT63_SELML

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Protein

Superoxide dismutase [Cu-Zn]

Gene

SELMODRAFT_271798

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Note: Binds 1 copper ion per subunit.UniRule annotation
  • Note: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
ORF Names:SELMODRAFT_271798Imported, SELMODRAFT_442405Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD8RT63.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

InParanoidiD8RT63.
KOiK04565.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8RT63-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPLKAVAVL AGTGVSGVVS FVEDGEGTTV SGKITGLVAG EHGFHVHALG
60 70 80 90 100
DTTNGCLSTG AHFNPNNLEH GDPSDKIRHA GDLGNVTAGP DGVAEFVIKD
110 120 130 140 150
KQIPLAGANS IVGRAVVVHA DRDDLGKGGH ELSKSTGNAG GRLACGVIGL

QASA
Length:154
Mass (Da):15,265
Last modified:October 5, 2010 - v1
Checksum:i750FC089BD161709
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377634 Genomic DNA. Translation: EFJ13179.1.
GL377589 Genomic DNA. Translation: EFJ24454.1.
RefSeqiXP_002974232.1. XM_002974186.1.
XP_002985601.1. XM_002985555.1.
UniGeneiSmo.15148.
Smo.5976.

Genome annotation databases

EnsemblPlantsiEFJ13179; EFJ13179; SELMODRAFT_271798.
EFJ24454; EFJ24454; SELMODRAFT_442405.
GeneIDi9653800.
9658067.
KEGGismo:SELMODRAFT_271798.
smo:SELMODRAFT_442405.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377634 Genomic DNA. Translation: EFJ13179.1 .
GL377589 Genomic DNA. Translation: EFJ24454.1 .
RefSeqi XP_002974232.1. XM_002974186.1.
XP_002985601.1. XM_002985555.1.
UniGenei Smo.15148.
Smo.5976.

3D structure databases

ProteinModelPortali D8RT63.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EFJ13179 ; EFJ13179 ; SELMODRAFT_271798 .
EFJ24454 ; EFJ24454 ; SELMODRAFT_442405 .
GeneIDi 9653800.
9658067.
KEGGi smo:SELMODRAFT_271798.
smo:SELMODRAFT_442405.

Phylogenomic databases

InParanoidi D8RT63.
KOi K04565.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
PRINTSi PR00068. CUZNDISMTASE.
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8RT63_SELML
AccessioniPrimary (citable) accession number: D8RT63
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 26, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3