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D8RBH6

- D8RBH6_SELML

UniProt

D8RBH6 - D8RBH6_SELML

Protein
Submitted name:

Putative uncharacterized protein

Gene

SELMODRAFT_145611

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. catalytic activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. biosynthetic process Source: InterPro
    2. response to hypoxia Source: EnsemblPlants/Gramene

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    ORF Names:SELMODRAFT_145611Imported, SELMODRAFT_267931Imported
    OrganismiSelaginella moellendorffii (Spikemoss)Imported
    Taxonomic identifieri88036 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
    ProteomesiUP000001514: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. chloroplast stroma Source: EnsemblPlants/Gramene
    3. membrane Source: EnsemblPlants/Gramene
    4. vacuole Source: EnsemblPlants/Gramene

    Family & Domainsi

    Phylogenomic databases

    KOiK14272.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR004839. Aminotransferase_I/II.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PfamiPF00155. Aminotran_1_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D8RBH6-1 [UniParc]FASTAAdd to Basket

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    MASKVLDPDN INENVKKCVY AVRGELYLRA SELQKEGKKI IFTNVGNPHA    50
    LGQKPLTFPR QVMALCQAPF LMDDPNVGLL FPPDAVARAK HYLSMTSGGV 100
    GAYSDSRGLP GVRQEVAEFI QKRDGYPSDP EHIFLTDGAS KGVMMMLNAL 150
    IRNEKDGVLV PIPQYPLYSA SIALYGGILI PYYLNEESNW SLDFSDVRNQ 200
    VVIARNKKIV PRALVFINPG NPTGQCLSVT NLQDLIKFCY KERLLLMADE 250
    VYQVNVYQDE RPFVSAKKVL MDMGAPYSNT VELVSFHSVS KGFLGECGQR 300
    GGYFEMTNIH PQTVEELYKV ASISLSPNVV GQIMMGLMVT PPRPFDISYP 350
    QYQAESKAII ESMRRRAHIM TDGFNKCEDV VCNFTEGAMY SFPRIKLSKA 400
    AMDAAAQAGK AADVFYCLKL LEATGISTVP GSGFGQKEGT LHLRTTILPL 450
    EQDMPGIMAK FQKFHADFMA QYSDYSVSSR L 481
    Length:481
    Mass (Da):53,378
    Last modified:October 5, 2010 - v1
    Checksum:i7FEAFA7E54123592
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377594 Genomic DNA. Translation: EFJ23041.1.
    GL377575 Genomic DNA. Translation: EFJ30498.1.
    RefSeqiXP_002968244.1. XM_002968198.1.
    XP_002976136.1. XM_002976090.1.
    UniGeneiSmo.978.

    Genome annotation databases

    EnsemblPlantsiEFJ23041; EFJ23041; SELMODRAFT_267931.
    EFJ30498; EFJ30498; SELMODRAFT_145611.
    GeneIDi9631419.
    9645831.
    KEGGismo:SELMODRAFT_145611.
    smo:SELMODRAFT_267931.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377594 Genomic DNA. Translation: EFJ23041.1 .
    GL377575 Genomic DNA. Translation: EFJ30498.1 .
    RefSeqi XP_002968244.1. XM_002968198.1.
    XP_002976136.1. XM_002976090.1.
    UniGenei Smo.978.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EFJ23041 ; EFJ23041 ; SELMODRAFT_267931 .
    EFJ30498 ; EFJ30498 ; SELMODRAFT_145611 .
    GeneIDi 9631419.
    9645831.
    KEGGi smo:SELMODRAFT_145611.
    smo:SELMODRAFT_267931.

    Phylogenomic databases

    KOi K14272.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR004839. Aminotransferase_I/II.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    Pfami PF00155. Aminotran_1_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
      Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
      , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
      Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiD8RBH6_SELML
    AccessioniPrimary (citable) accession number: D8RBH6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3