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D8RAG3

- D8RAG3_SELML

UniProt

D8RAG3 - D8RAG3_SELML

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Protein
Submitted name:

Putative uncharacterized protein

Gene
SELMODRAFT_440247
Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. dihydroorotate oxidase activity Source: InterPro

GO - Biological processi

  1. 'de novo' pyrimidine nucleobase biosynthetic process Source: InterPro
  2. UMP biosynthetic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:SELMODRAFT_440247Imported
OrganismiSelaginella moellendorffii (Spikemoss)
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

KOiK00254.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR012135. Dihydroorotate_DH_1_2.
IPR005719. Dihydroorotate_DH_2.
IPR001295. Dihydroorotate_DH_CS.
[Graphical view]
PfamiPF01180. DHO_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01036. pyrD_sub2. 1 hit.
PROSITEiPS00911. DHODEHASE_1. 1 hit.
PS00912. DHODEHASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8RAG3-1 [UniParc]FASTAAdd to Basket

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MREGRLLAAI ARRFAYGSSS CIHTAAETSG SAKEAVAAAF QKPPLPPKIR    50
LTWGRVLTGT LLGAVIAGGA YVGTRDEATI SAWTFEAAKY INPLFRLLDP 100
ENAHKVAIWA SSHCLCPRET RPDPPVLEVS VWGRTFSNPV GLAAGFDKNA 150
EAVEGLLGIG FGFMEVGSVT PVPQEGNPKP RVFRLPEQGA IINRYGFNSE 200
GIVAVAKRLG AQHGKRRMAE TVNSAITTNT EQRVLGGKAG PGILGVNLGK 250
NKTSEDAAAD YVQGVHTLSQ YADYLVINVS SPNTPGLRKL QGRKQLKDLI 300
KKVLAARDEM QWGEEGPPPL LVKIAPDLSK QDLADIAAVA LSLRLDGLII 350
ANTTVSRPDS VIGLVHADEM GGLSGKPLFT LSTEVLREMY QLTWGKIPLV 400
GCGGISSGEE AYVKIRAGAT LVQLYTTFAY EGPALIPRIK AELAACLERD 450
GFKSAQEAIG ADHR 464
Length:464
Mass (Da):49,511
Last modified:October 5, 2010 - v1
Checksum:iE1574FF94CF98AF5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377575 Genomic DNA. Translation: EFJ30613.1.
RefSeqiXP_002968359.1. XM_002968313.1.
UniGeneiSmo.7808.

Genome annotation databases

EnsemblPlantsiEFJ30613; EFJ30613; SELMODRAFT_440247.
GeneIDi9631151.
KEGGismo:SELMODRAFT_440247.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377575 Genomic DNA. Translation: EFJ30613.1 .
RefSeqi XP_002968359.1. XM_002968313.1.
UniGenei Smo.7808.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EFJ30613 ; EFJ30613 ; SELMODRAFT_440247 .
GeneIDi 9631151.
KEGGi smo:SELMODRAFT_440247.

Phylogenomic databases

KOi K00254.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
InterProi IPR013785. Aldolase_TIM.
IPR012135. Dihydroorotate_DH_1_2.
IPR005719. Dihydroorotate_DH_2.
IPR001295. Dihydroorotate_DH_CS.
[Graphical view ]
Pfami PF01180. DHO_dh. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01036. pyrD_sub2. 1 hit.
PROSITEi PS00911. DHODEHASE_1. 1 hit.
PS00912. DHODEHASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8RAG3_SELML
AccessioniPrimary (citable) accession number: D8RAG3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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