D8RAG3 (D8RAG3_SELML) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EFJ30613.1

Gene names

ORF Names:

SELMODRAFT_440247 EMBL EFJ30613.1

Organism

Selaginella moellendorffii (Spikemoss) [Complete proteome]

Taxonomic identifier

88036 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Lycopodiophyta › Isoetopsida › Selaginellales › Selaginellaceae › Selaginella

Protein attributes

Sequence length	464 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	'de novo' pyrimidine nucleobase biosynthetic process Inferred from electronic annotation. Source: InterPro UMP biosynthetic process Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro mitochondrion Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	dihydroorotate oxidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8RAG3 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: E1574FF94CF98AF5	FASTA	464	49,511
	10 20 30 40 50 60 MREGRLLAAI ARRFAYGSSS CIHTAAETSG SAKEAVAAAF QKPPLPPKIR LTWGRVLTGT 70 80 90 100 110 120 LLGAVIAGGA YVGTRDEATI SAWTFEAAKY INPLFRLLDP ENAHKVAIWA SSHCLCPRET 130 140 150 160 170 180 RPDPPVLEVS VWGRTFSNPV GLAAGFDKNA EAVEGLLGIG FGFMEVGSVT PVPQEGNPKP 190 200 210 220 230 240 RVFRLPEQGA IINRYGFNSE GIVAVAKRLG AQHGKRRMAE TVNSAITTNT EQRVLGGKAG 250 260 270 280 290 300 PGILGVNLGK NKTSEDAAAD YVQGVHTLSQ YADYLVINVS SPNTPGLRKL QGRKQLKDLI 310 320 330 340 350 360 KKVLAARDEM QWGEEGPPPL LVKIAPDLSK QDLADIAAVA LSLRLDGLII ANTTVSRPDS 370 380 390 400 410 420 VIGLVHADEM GGLSGKPLFT LSTEVLREMY QLTWGKIPLV GCGGISSGEE AYVKIRAGAT 430 440 450 460 LVQLYTTFAY EGPALIPRIK AELAACLERD GFKSAQEAIG ADHR

References

[1]

"The Selaginella genome identifies genetic changes associated with the evolution of vascular plants." Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C. , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Sorensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V. Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL377575 Genomic DNA. Translation: EFJ30613.1.
RefSeq	XP_002968359.1. XM_002968313.1.
UniGene	Smo.7808.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	EFJ30613; EFJ30613; SELMODRAFT_440247.
GeneID	9631151.
KEGG	smo:SELMODRAFT_440247.
Phylogenomic databases
KO	K00254.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
InterPro	IPR013785. Aldolase_TIM. IPR012135. Dihydroorotate_DH_1_2. IPR005719. Dihydroorotate_DH_2. IPR001295. Dihydroorotate_DH_CS. [Graphical view]
Pfam	PF01180. DHO_dh. 1 hit. [Graphical view]
TIGRFAMs	TIGR01036. pyrD_sub2. 1 hit.
PROSITE	PS00911. DHODEHASE_1. 1 hit. PS00912. DHODEHASE_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8RAG3_SELML

Accession

Primary (citable) accession number: D8RAG3

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	March 6, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)