D8QYI4 (D8QYI4_SELML) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EFJ35617.1

Gene names

ORF Names:

SELMODRAFT_6364 EMBL EFJ35617.1

Organism

Selaginella moellendorffii (Spikemoss) [Complete proteome]

Taxonomic identifier

88036 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Lycopodiophyta › Isoetopsida › Selaginellales › Selaginellaceae › Selaginella

Protein attributes

Sequence length	180 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L5P family. RuleBase RU003930

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003930
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast envelope Inferred from electronic annotation. Source: EnsemblPlants/Gramene chloroplast stroma Inferred from electronic annotation. Source: EnsemblPlants/Gramene cytosolic ribosome Inferred from electronic annotation. Source: EnsemblPlants/Gramene membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL EFJ35617.1
	Non-terminal residue	180	1	EMBL EFJ35617.1

Sequences

	Sequence		Length	Mass (Da)
	D8QYI4 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: F9EB1E11DC3D2FEF	FASTA	180	19,998
	10 20 30 40 50 60 QVQRLKSQYL DKVVPAMMEE FSYTNTLQVP KLNKIVVNCG NGEGAQNAKI LEAMQKDLSL 70 80 90 100 110 120 ITGQKPIVTR AKKAVAAFKL RKDVPVGIAV TLRGEVMYSF LDRLVNLAFP RTRDFQGVSP 130 140 150 160 170 180 YSFDGKGNYN VGISDQSVFP EIKFESIDQQ RGFDVAICTS ANSDKEGQRL LSLLGMPFKD

References

[1]

"The Selaginella genome identifies genetic changes associated with the evolution of vascular plants." Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C. , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Sorensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V. Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL377568 Genomic DNA. Translation: EFJ35617.1.
RefSeq	XP_002963746.1. XM_002963700.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	EFJ35617; EFJ35617; SELMODRAFT_6364.
GeneID	9655275.
KEGG	smo:SELMODRAFT_6364.
Phylogenomic databases
KO	K02931.
Family and domain databases
Gene3D	3.30.1440.10. 1 hit.
HAMAP	MF_01333_B. Ribosomal_L5_B.
InterPro	IPR002132. Ribosomal_L5. IPR020930. Ribosomal_L5_bac-type. IPR020929. Ribosomal_L5_CS. IPR022803. Ribosomal_L5_domain. [Graphical view]
PANTHER	PTHR11994. PTHR11994. 1 hit.
Pfam	PF00281. Ribosomal_L5. 1 hit. PF00673. Ribosomal_L5_C. 1 hit. [Graphical view]
PIRSF	PIRSF002161. Ribosomal_L5. 1 hit.
SUPFAM	SSF55282. Ribosomal_L5. 1 hit.
PROSITE	PS00358. RIBOSOMAL_L5. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8QYI4_SELML

Accession

Primary (citable) accession number: D8QYI4

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	March 6, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)