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D8QXJ8

- D8QXJ8_SELML

UniProt

D8QXJ8 - D8QXJ8_SELML

Protein

Histone deacetylase

Gene

SELMODRAFT_114783

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

    GO - Molecular functioni

    1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
    2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
    3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
    4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

    GO - Biological processi

    1. DNA mediated transformation Source: EnsemblPlants/Gramene
    2. histone acetylation Source: EnsemblPlants/Gramene
    3. jasmonic acid and ethylene-dependent systemic resistance Source: EnsemblPlants/Gramene
    4. negative regulation of transcription, DNA-templated Source: EnsemblPlants/Gramene
    5. pathogenesis Source: EnsemblPlants/Gramene
    6. regulation of multicellular organismal development Source: EnsemblPlants/Gramene
    7. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
    Gene namesi
    ORF Names:SELMODRAFT_114783Imported, SELMODRAFT_80012Imported
    OrganismiSelaginella moellendorffii (Spikemoss)Imported
    Taxonomic identifieri88036 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiidaeSelaginellalesSelaginellaceaeSelaginella
    ProteomesiUP000001514: Unassembled WGS sequence

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    KOiK06067.

    Family and domain databases

    Gene3Di3.40.800.20. 1 hit.
    InterProiIPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSiPR01270. HDASUPER.
    PR01271. HISDACETLASE.

    Sequencei

    Sequence statusi: Complete.

    D8QXJ8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDGSGNSLAS GPEGRSKRVA YFYDPEVGNY YYGQGHPMKP HRIRMTHSLL    50
    VHYGIHNKLE VLKPLPAKDR DLCRFHADDY VAFLRVITPE TQHEHLRALK 100
    RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHGHSDIA VNWSGGLHHA 150
    KKCEASGFCY VNDIVLAILE LLKYHARVLY IDIDIHHGDG VEEAFYTTDR 200
    VMTVSFHKFG DYFPGTGDVR DMGHAKGKYY SLNVPLNDGI DDESYHSLFK 250
    PIITKVMEVF QPGAVVLQCG ADSLSGDRLG CFNLSIKGHA QCVKFMRSFN 300
    VPLLLLGGGG YTIRNVARCW CYETAVAVGV ELEDKMPYNE YYEYFGPDYT 350
    LHVTPSNMEN QNSAQYLESI RNRLLENLSN LQHVPSVPFQ ERPPDTDLPE 400
    EVSLSVASTW 410
    Length:410
    Mass (Da):46,017
    Last modified:October 5, 2010 - v1
    Checksum:iD3D1938E0B41C4C1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377614 Genomic DNA. Translation: EFJ17426.1.
    GL377568 Genomic DNA. Translation: EFJ35052.1.
    RefSeqiXP_002963181.1. XM_002963135.1.
    XP_002981611.1. XM_002981565.1.
    UniGeneiSmo.16326.
    Smo.4908.

    Genome annotation databases

    EnsemblPlantsiEFJ17426; EFJ17426; SELMODRAFT_114783.
    EFJ35052; EFJ35052; SELMODRAFT_80012.
    GeneIDi9643773.
    9648109.
    KEGGismo:SELMODRAFT_114783.
    smo:SELMODRAFT_80012.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377614 Genomic DNA. Translation: EFJ17426.1 .
    GL377568 Genomic DNA. Translation: EFJ35052.1 .
    RefSeqi XP_002963181.1. XM_002963135.1.
    XP_002981611.1. XM_002981565.1.
    UniGenei Smo.16326.
    Smo.4908.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EFJ17426 ; EFJ17426 ; SELMODRAFT_114783 .
    EFJ35052 ; EFJ35052 ; SELMODRAFT_80012 .
    GeneIDi 9643773.
    9648109.
    KEGGi smo:SELMODRAFT_114783.
    smo:SELMODRAFT_80012.

    Phylogenomic databases

    KOi K06067.

    Family and domain databases

    Gene3Di 3.40.800.20. 1 hit.
    InterProi IPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSi PR01270. HDASUPER.
    PR01271. HISDACETLASE.
    ProtoNeti Search...

    Publicationsi

    1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
      Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
      , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
      Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiD8QXJ8_SELML
    AccessioniPrimary (citable) accession number: D8QXJ8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3