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D8QXJ8

- D8QXJ8_SELML

UniProt

D8QXJ8 - D8QXJ8_SELML

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Protein

Histone deacetylase

Gene
SELMODRAFT_114783, SELMODRAFT_80012
Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

  1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
  2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
  3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
  4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

GO - Biological processi

  1. DNA mediated transformation Source: EnsemblPlants/Gramene
  2. histone acetylation Source: EnsemblPlants/Gramene
  3. jasmonic acid and ethylene-dependent systemic resistance Source: EnsemblPlants/Gramene
  4. negative regulation of transcription, DNA-templated Source: EnsemblPlants/Gramene
  5. pathogenesis Source: EnsemblPlants/Gramene
  6. regulation of multicellular organismal development Source: EnsemblPlants/Gramene
  7. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
ORF Names:SELMODRAFT_114783Imported, SELMODRAFT_80012Imported
OrganismiSelaginella moellendorffii (Spikemoss)
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella
ProteomesiUP000001514: Unassembled WGS sequence

Subcellular locationi

Nucleus By similarity UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK06067.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

D8QXJ8-1 [UniParc]FASTAAdd to Basket

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MDGSGNSLAS GPEGRSKRVA YFYDPEVGNY YYGQGHPMKP HRIRMTHSLL    50
VHYGIHNKLE VLKPLPAKDR DLCRFHADDY VAFLRVITPE TQHEHLRALK 100
RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHGHSDIA VNWSGGLHHA 150
KKCEASGFCY VNDIVLAILE LLKYHARVLY IDIDIHHGDG VEEAFYTTDR 200
VMTVSFHKFG DYFPGTGDVR DMGHAKGKYY SLNVPLNDGI DDESYHSLFK 250
PIITKVMEVF QPGAVVLQCG ADSLSGDRLG CFNLSIKGHA QCVKFMRSFN 300
VPLLLLGGGG YTIRNVARCW CYETAVAVGV ELEDKMPYNE YYEYFGPDYT 350
LHVTPSNMEN QNSAQYLESI RNRLLENLSN LQHVPSVPFQ ERPPDTDLPE 400
EVSLSVASTW 410
Length:410
Mass (Da):46,017
Last modified:October 5, 2010 - v1
Checksum:iD3D1938E0B41C4C1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377614 Genomic DNA. Translation: EFJ17426.1.
GL377568 Genomic DNA. Translation: EFJ35052.1.
RefSeqiXP_002963181.1. XM_002963135.1.
XP_002981611.1. XM_002981565.1.
UniGeneiSmo.16326.
Smo.4908.

Genome annotation databases

EnsemblPlantsiEFJ17426; EFJ17426; SELMODRAFT_114783.
EFJ35052; EFJ35052; SELMODRAFT_80012.
GeneIDi9643773.
9648109.
KEGGismo:SELMODRAFT_114783.
smo:SELMODRAFT_80012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377614 Genomic DNA. Translation: EFJ17426.1 .
GL377568 Genomic DNA. Translation: EFJ35052.1 .
RefSeqi XP_002963181.1. XM_002963135.1.
XP_002981611.1. XM_002981565.1.
UniGenei Smo.16326.
Smo.4908.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EFJ17426 ; EFJ17426 ; SELMODRAFT_114783 .
EFJ35052 ; EFJ35052 ; SELMODRAFT_80012 .
GeneIDi 9643773.
9648109.
KEGGi smo:SELMODRAFT_114783.
smo:SELMODRAFT_80012.

Phylogenomic databases

KOi K06067.

Family and domain databases

Gene3Di 3.40.800.20. 1 hit.
InterProi IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view ]
PANTHERi PTHR10625. PTHR10625. 1 hit.
Pfami PF00850. Hist_deacetyl. 1 hit.
[Graphical view ]
PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
PRINTSi PR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNeti Search...

Publicationsi

  1. "The Selaginella genome identifies genetic changes associated with the evolution of vascular plants."
    Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M., dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W., Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D., Chapple C., Cheng C.
    , Correa L.G., Dacre M., DeBarry J., Dreyer I., Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K., Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M., Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G., Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y., Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K., Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R., Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B., Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y., Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N., Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N., Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S., Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q., Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J., Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.
    Science 332:960-963(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8QXJ8_SELML
AccessioniPrimary (citable) accession number: D8QXJ8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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