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Protein

Histone deacetylase

Gene

SELMODRAFT_114783

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N6-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionChromatin regulatorUniRule annotationSAAS annotation, HydrolaseUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotationSAAS annotation (EC:3.5.1.98UniRule annotationSAAS annotation)
Gene namesi
ORF Names:SELMODRAFT_114783Imported, SELMODRAFT_80012Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiopsidaSelaginellalesSelaginellaceaeSelaginella
Proteomesi
  • UP000001514 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi88036.EFJ35052.

Structurei

3D structure databases

ProteinModelPortaliD8QXJ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini36 – 325Hist_deacetylInterPro annotationAdd BLAST290

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
KOiK06067.
OMAiKRVCYFF.
OrthoDBiEOG093609CH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiView protein in InterPro
IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiView protein in Pfam
PF00850. Hist_deacetyl. 1 hit.
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

D8QXJ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDGSGNSLAS GPEGRSKRVA YFYDPEVGNY YYGQGHPMKP HRIRMTHSLL
60 70 80 90 100
VHYGIHNKLE VLKPLPAKDR DLCRFHADDY VAFLRVITPE TQHEHLRALK
110 120 130 140 150
RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHGHSDIA VNWSGGLHHA
160 170 180 190 200
KKCEASGFCY VNDIVLAILE LLKYHARVLY IDIDIHHGDG VEEAFYTTDR
210 220 230 240 250
VMTVSFHKFG DYFPGTGDVR DMGHAKGKYY SLNVPLNDGI DDESYHSLFK
260 270 280 290 300
PIITKVMEVF QPGAVVLQCG ADSLSGDRLG CFNLSIKGHA QCVKFMRSFN
310 320 330 340 350
VPLLLLGGGG YTIRNVARCW CYETAVAVGV ELEDKMPYNE YYEYFGPDYT
360 370 380 390 400
LHVTPSNMEN QNSAQYLESI RNRLLENLSN LQHVPSVPFQ ERPPDTDLPE
410
EVSLSVASTW
Length:410
Mass (Da):46,017
Last modified:October 5, 2010 - v1
Checksum:iD3D1938E0B41C4C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377614 Genomic DNA. Translation: EFJ17426.1.
GL377568 Genomic DNA. Translation: EFJ35052.1.
RefSeqiXP_002963181.1. XM_002963135.1.
XP_002981611.1. XM_002981565.1.
UniGeneiSmo.16326.
Smo.4908.

Genome annotation databases

EnsemblPlantsiEFJ17426; EFJ17426; SELMODRAFT_114783.
EFJ35052; EFJ35052; SELMODRAFT_80012.
GeneIDi9643773.
9648109.
GrameneiEFJ17426; EFJ17426; SELMODRAFT_114783.
EFJ35052; EFJ35052; SELMODRAFT_80012.
KEGGismo:SELMODRAFT_114783.
smo:SELMODRAFT_80012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377614 Genomic DNA. Translation: EFJ17426.1.
GL377568 Genomic DNA. Translation: EFJ35052.1.
RefSeqiXP_002963181.1. XM_002963135.1.
XP_002981611.1. XM_002981565.1.
UniGeneiSmo.16326.
Smo.4908.

3D structure databases

ProteinModelPortaliD8QXJ8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi88036.EFJ35052.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEFJ17426; EFJ17426; SELMODRAFT_114783.
EFJ35052; EFJ35052; SELMODRAFT_80012.
GeneIDi9643773.
9648109.
GrameneiEFJ17426; EFJ17426; SELMODRAFT_114783.
EFJ35052; EFJ35052; SELMODRAFT_80012.
KEGGismo:SELMODRAFT_114783.
smo:SELMODRAFT_80012.

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
KOiK06067.
OMAiKRVCYFF.
OrthoDBiEOG093609CH.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiView protein in InterPro
IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiView protein in Pfam
PF00850. Hist_deacetyl. 1 hit.
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetiSearch...

Entry informationi

Entry nameiD8QXJ8_SELML
AccessioniPrimary (citable) accession number: D8QXJ8
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 7, 2017
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.