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D8QXJ8 (D8QXJ8_SELML) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone deacetylase PIRNR PIRNR037913

EC=3.5.1.98 PIRNR PIRNR037913
Gene names
ORF Names:SELMODRAFT_114783 EMBL EFJ17426.1, SELMODRAFT_80012 EMBL EFJ35052.1
OrganismSelaginella moellendorffii (Spikemoss) [Complete proteome]
Taxonomic identifier88036 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiophytaIsoetopsidaSelaginellalesSelaginellaceaeSelaginella

Protein attributes

Sequence length410 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913

Subcellular location

Nucleus By similarity PIRNR PIRNR037913.

Sequence similarities

Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Ontologies

Keywords
   Biological processTranscription
Transcription regulation PIRNR PIRNR037913
   Cellular componentNucleus PIRNR PIRNR037913
   Molecular functionChromatin regulator PIRNR PIRNR037913
Hydrolase SAAS SAAS000286 PIRNR PIRNR037913
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA mediated transformation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

histone acetylation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

jasmonic acid and ethylene-dependent systemic resistance

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

negative regulation of transcription, DNA-templated

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

pathogenesis

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

regulation of multicellular organismal development

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionNAD-dependent histone deacetylase activity (H3-K14 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

NAD-dependent histone deacetylase activity (H3-K18 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

NAD-dependent histone deacetylase activity (H3-K9 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

NAD-dependent histone deacetylase activity (H4-K16 specific)

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8QXJ8 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: D3D1938E0B41C4C1

FASTA41046,017
        10         20         30         40         50         60 
MDGSGNSLAS GPEGRSKRVA YFYDPEVGNY YYGQGHPMKP HRIRMTHSLL VHYGIHNKLE 

        70         80         90        100        110        120 
VLKPLPAKDR DLCRFHADDY VAFLRVITPE TQHEHLRALK RFNVGEDCPV FDGLYSFCQT 

       130        140        150        160        170        180 
YAGGSVGGAV KLNHGHSDIA VNWSGGLHHA KKCEASGFCY VNDIVLAILE LLKYHARVLY 

       190        200        210        220        230        240 
IDIDIHHGDG VEEAFYTTDR VMTVSFHKFG DYFPGTGDVR DMGHAKGKYY SLNVPLNDGI 

       250        260        270        280        290        300 
DDESYHSLFK PIITKVMEVF QPGAVVLQCG ADSLSGDRLG CFNLSIKGHA QCVKFMRSFN 

       310        320        330        340        350        360 
VPLLLLGGGG YTIRNVARCW CYETAVAVGV ELEDKMPYNE YYEYFGPDYT LHVTPSNMEN 

       370        380        390        400        410 
QNSAQYLESI RNRLLENLSN LQHVPSVPFQ ERPPDTDLPE EVSLSVASTW 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL377614 Genomic DNA. Translation: EFJ17426.1.
GL377568 Genomic DNA. Translation: EFJ35052.1.
RefSeqXP_002963181.1. XM_002963135.1.
XP_002981611.1. XM_002981565.1.
UniGeneSmo.16326.
Smo.4908.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEFJ17426; EFJ17426; SELMODRAFT_114783.
EFJ35052; EFJ35052; SELMODRAFT_80012.
GeneID9643773.
9648109.
KEGGsmo:SELMODRAFT_114783.
smo:SELMODRAFT_80012.

Phylogenomic databases

KOK06067.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetSearch...

Entry information

Entry nameD8QXJ8_SELML
AccessionPrimary (citable) accession number: D8QXJ8
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 9, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)