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D8Q8Z7

- D8Q8Z7_SCHCM

UniProt

D8Q8Z7 - D8Q8Z7_SCHCM

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Protein

DNA ligase

Gene

SCHCODRAFT_235879

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SCHCODRAFT_235879Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD8Q8Z7.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8Q8Z7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPAKRSRDAP ESPNKRQKGK QARIDTFFSS PRTPAHAPSP PTATHEVIEI
60 70 80 90 100
DSSDDAKEPK AGPSKAPSHA SPPTPFVRTF SLKNNHAPPS YPSLTTDSLS
110 120 130 140 150
FDVAQVSAQW TAGSPVPYSF LAHTLKSVSE TKSRIAITDA LTNCLRVVVQ
160 170 180 190 200
HHPASLLPAV YLLSNTVAPS YESVELGLGT SISKSIQQIS GLSSAALRDL
210 220 230 240 250
YNQLGDVGDV AFAAKSKVRT LIPHPPLLVP GVYKSLLSIA HCKGQGAVKE
260 270 280 290 300
KQKIVEKLLI ASKGEETRFL ARTLTQNLRV GAVRTTLLIA LSRAFVLTPR
310 320 330 340 350
PDGRPSGLHA SEKLLDSVRA LGSPPKSPQK KKRADSDDDA RERMKALFSQ
360 370 380 390 400
AESLVKQVYV RHPCYEDIIE ALVTEGLDGL DQHVSLAVGI PLMPTLGSPM
410 420 430 440 450
RSLDEVYDIL QDHPFAAELK YDGQRAQIHG RRDDEGNTSV RIFSRHLEDM
460 470 480 490 500
TTKYPDVVHM IQIMCGRTTG PTSFIIDSEI VALDPETGAL KTFQELSNRA
510 520 530 540 550
RKDVQLADVR VAVGVFAFDL MFLDGQELIG LPFRERRDKL YSRFPAFVPE
560 570 580 590 600
EKAIARFSHV DCCDSQLGRD AIEGFMVKAT ESRCEGLMIK LLDSCELEER
610 620 630 640 650
DAKKAKTRRK PFPATYEPDK RTAAWLKLKK DYITGLGDSF DLVPVGAWHG
660 670 680 690 700
NGRKAKWWSP ILLALKSEDG ELVAVCKCMS GFTDVFYKAL NDRYPLTEQS
710 720 730 740 750
ETCSKQPLWG GDFGGFRPEV YFKPHEVWEV RAADITVSPV SVAAKGLVSD
760 770 780 790 800
SRGLSLRFPR YIKTREDKGI EEATTASQVA RMYQQQQARG IDGGGNDEGD
810 820
LLDVDVDEDI EEHSDSAGED DST
Length:823
Mass (Da):90,593
Last modified:October 5, 2010 - v1
Checksum:iE677B76D3940347E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377308 Genomic DNA. Translation: EFI95150.1.
RefSeqiXP_003030053.1. XM_003030007.1.

Genome annotation databases

GeneIDi9588032.
KEGGiscm:SCHCODRAFT_235879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377308 Genomic DNA. Translation: EFI95150.1 .
RefSeqi XP_003030053.1. XM_003030007.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9588032.
KEGGi scm:SCHCODRAFT_235879.

Phylogenomic databases

InParanoidi D8Q8Z7.
KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210Imported.

Entry informationi

Entry nameiD8Q8Z7_SCHCM
AccessioniPrimary (citable) accession number: D8Q8Z7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 29, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3