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D8Q8Z7

- D8Q8Z7_SCHCM

UniProt

D8Q8Z7 - D8Q8Z7_SCHCM

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Protein

DNA ligase

Gene
SCHCODRAFT_235879
Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SCHCODRAFT_235879Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8Q8Z7-1 [UniParc]FASTAAdd to Basket

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MPAKRSRDAP ESPNKRQKGK QARIDTFFSS PRTPAHAPSP PTATHEVIEI    50
DSSDDAKEPK AGPSKAPSHA SPPTPFVRTF SLKNNHAPPS YPSLTTDSLS 100
FDVAQVSAQW TAGSPVPYSF LAHTLKSVSE TKSRIAITDA LTNCLRVVVQ 150
HHPASLLPAV YLLSNTVAPS YESVELGLGT SISKSIQQIS GLSSAALRDL 200
YNQLGDVGDV AFAAKSKVRT LIPHPPLLVP GVYKSLLSIA HCKGQGAVKE 250
KQKIVEKLLI ASKGEETRFL ARTLTQNLRV GAVRTTLLIA LSRAFVLTPR 300
PDGRPSGLHA SEKLLDSVRA LGSPPKSPQK KKRADSDDDA RERMKALFSQ 350
AESLVKQVYV RHPCYEDIIE ALVTEGLDGL DQHVSLAVGI PLMPTLGSPM 400
RSLDEVYDIL QDHPFAAELK YDGQRAQIHG RRDDEGNTSV RIFSRHLEDM 450
TTKYPDVVHM IQIMCGRTTG PTSFIIDSEI VALDPETGAL KTFQELSNRA 500
RKDVQLADVR VAVGVFAFDL MFLDGQELIG LPFRERRDKL YSRFPAFVPE 550
EKAIARFSHV DCCDSQLGRD AIEGFMVKAT ESRCEGLMIK LLDSCELEER 600
DAKKAKTRRK PFPATYEPDK RTAAWLKLKK DYITGLGDSF DLVPVGAWHG 650
NGRKAKWWSP ILLALKSEDG ELVAVCKCMS GFTDVFYKAL NDRYPLTEQS 700
ETCSKQPLWG GDFGGFRPEV YFKPHEVWEV RAADITVSPV SVAAKGLVSD 750
SRGLSLRFPR YIKTREDKGI EEATTASQVA RMYQQQQARG IDGGGNDEGD 800
LLDVDVDEDI EEHSDSAGED DST 823
Length:823
Mass (Da):90,593
Last modified:October 5, 2010 - v1
Checksum:iE677B76D3940347E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377308 Genomic DNA. Translation: EFI95150.1.
RefSeqiXP_003030053.1. XM_003030007.1.

Genome annotation databases

GeneIDi9588032.
KEGGiscm:SCHCODRAFT_235879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377308 Genomic DNA. Translation: EFI95150.1 .
RefSeqi XP_003030053.1. XM_003030007.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9588032.
KEGGi scm:SCHCODRAFT_235879.

Phylogenomic databases

KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210.

Entry informationi

Entry nameiD8Q8Z7_SCHCM
AccessioniPrimary (citable) accession number: D8Q8Z7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 13, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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