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D8Q8Z7

- D8Q8Z7_SCHCM

UniProt

D8Q8Z7 - D8Q8Z7_SCHCM

Protein

DNA ligase

Gene

SCHCODRAFT_235879

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:SCHCODRAFT_235879Imported
    OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
    Taxonomic identifieri578458 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
    ProteomesiUP000007431: Unassembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8Q8Z7-1 [UniParc]FASTAAdd to Basket

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    MPAKRSRDAP ESPNKRQKGK QARIDTFFSS PRTPAHAPSP PTATHEVIEI    50
    DSSDDAKEPK AGPSKAPSHA SPPTPFVRTF SLKNNHAPPS YPSLTTDSLS 100
    FDVAQVSAQW TAGSPVPYSF LAHTLKSVSE TKSRIAITDA LTNCLRVVVQ 150
    HHPASLLPAV YLLSNTVAPS YESVELGLGT SISKSIQQIS GLSSAALRDL 200
    YNQLGDVGDV AFAAKSKVRT LIPHPPLLVP GVYKSLLSIA HCKGQGAVKE 250
    KQKIVEKLLI ASKGEETRFL ARTLTQNLRV GAVRTTLLIA LSRAFVLTPR 300
    PDGRPSGLHA SEKLLDSVRA LGSPPKSPQK KKRADSDDDA RERMKALFSQ 350
    AESLVKQVYV RHPCYEDIIE ALVTEGLDGL DQHVSLAVGI PLMPTLGSPM 400
    RSLDEVYDIL QDHPFAAELK YDGQRAQIHG RRDDEGNTSV RIFSRHLEDM 450
    TTKYPDVVHM IQIMCGRTTG PTSFIIDSEI VALDPETGAL KTFQELSNRA 500
    RKDVQLADVR VAVGVFAFDL MFLDGQELIG LPFRERRDKL YSRFPAFVPE 550
    EKAIARFSHV DCCDSQLGRD AIEGFMVKAT ESRCEGLMIK LLDSCELEER 600
    DAKKAKTRRK PFPATYEPDK RTAAWLKLKK DYITGLGDSF DLVPVGAWHG 650
    NGRKAKWWSP ILLALKSEDG ELVAVCKCMS GFTDVFYKAL NDRYPLTEQS 700
    ETCSKQPLWG GDFGGFRPEV YFKPHEVWEV RAADITVSPV SVAAKGLVSD 750
    SRGLSLRFPR YIKTREDKGI EEATTASQVA RMYQQQQARG IDGGGNDEGD 800
    LLDVDVDEDI EEHSDSAGED DST 823
    Length:823
    Mass (Da):90,593
    Last modified:October 5, 2010 - v1
    Checksum:iE677B76D3940347E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377308 Genomic DNA. Translation: EFI95150.1.
    RefSeqiXP_003030053.1. XM_003030007.1.

    Genome annotation databases

    GeneIDi9588032.
    KEGGiscm:SCHCODRAFT_235879.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377308 Genomic DNA. Translation: EFI95150.1 .
    RefSeqi XP_003030053.1. XM_003030007.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9588032.
    KEGGi scm:SCHCODRAFT_235879.

    Phylogenomic databases

    KOi K10747.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: H4-8 / FGSC 9210Imported.

    Entry informationi

    Entry nameiD8Q8Z7_SCHCM
    AccessioniPrimary (citable) accession number: D8Q8Z7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3