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Protein
Submitted name:

Glycoside hydrolase family 13 protein

Gene

SCHCODRAFT_235431

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei222 – 2221NucleophileUniRule annotation
Active sitei246 – 2461Proton donorUniRule annotation
Sitei313 – 3131Transition state stabilizerUniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 13 proteinImported
Gene namesi
ORF Names:SCHCODRAFT_235431Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431: Unassembled WGS sequence

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi48 ↔ 56UniRule annotation
Disulfide bondi167 ↔ 180UniRule annotation
Disulfide bondi256 ↔ 299UniRule annotation

Keywords - PTMi

Disulfide bondUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliD8Q7N0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiD8Q7N0.
KOiK01176.
OrthoDBiEOG7RBZJ4.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013777. A-amylase_fun.
IPR015340. A_amylase_DUF1966_C.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09260. DUF1966. 1 hit.
[Graphical view]
PIRSFiPIRSF001024. Alph-amyl_fung. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

D8Q7N0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFSKSLLLSL PLISGAFAAT AEDWRKRSIY ELVTDRFART DGSTTAPCNT
60 70 80 90 100
GDRVFCGGTW QGLTNHLDYI KNMGFTAVWI SPITMQIYGN THSGEAYHGY
110 120 130 140 150
WPKDYYQLNP NFGTADDLRN LAKALHDRGM YLMVDLVVNH YASWGDEDIQ
160 170 180 190 200
WSQYVPFNDQ KYFHDKCWIN WNNQQSIEDC WMGDGYVPLP DLDTENDYVV
210 220 230 240 250
STLEKYVGEL VSNYSIDGLR LDATKNIRKD FWPGFCSAAG VYCQGEVWTA
260 270 280 290 300
DVNQFCPWQD YMAGLHNYPM HDYTVSAFSW HKGDVNALAN TLNALTNQCA
310 320 330 340 350
DVGLLGSFTE NHDNPRMGSV TNDLSQRKSL AAMTILSGNG IPIVYYGQEQ
360 370 380 390 400
IFDAKKDPDN REALWLSGYA TGGDKLYDYF AQLNGLRNWL VWNIPEGDYL
410 420 430 440 450
TAKPSYSVYD THTLVASKGV TKVLVSNMGA SVDGSVATSG WSAGEDVVDA
460 470 480 490
LSCNTYTADS QGKATISMKL SLPAAVLPKS SLGGSGICGL
Length:490
Mass (Da):54,358
Last modified:October 5, 2010 - v1
Checksum:iBA75C63A39F47A8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377307 Genomic DNA. Translation: EFI96050.1.
RefSeqiXP_003030953.1. XM_003030907.1.

Genome annotation databases

GeneIDi9586700.
KEGGiscm:SCHCODRAFT_235431.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377307 Genomic DNA. Translation: EFI96050.1.
RefSeqiXP_003030953.1. XM_003030907.1.

3D structure databases

ProteinModelPortaliD8Q7N0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi9586700.
KEGGiscm:SCHCODRAFT_235431.

Phylogenomic databases

InParanoidiD8Q7N0.
KOiK01176.
OrthoDBiEOG7RBZJ4.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013777. A-amylase_fun.
IPR015340. A_amylase_DUF1966_C.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09260. DUF1966. 1 hit.
[Graphical view]
PIRSFiPIRSF001024. Alph-amyl_fung. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210Imported.

Entry informationi

Entry nameiD8Q7N0_SCHCM
AccessioniPrimary (citable) accession number: D8Q7N0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: February 4, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.