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Protein
Submitted name:

Glycoside hydrolase family 13 protein

Gene

SCHCODRAFT_108800

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 13 proteinImported
Gene namesi
ORF Names:SCHCODRAFT_108800Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi578458.XP_003031655.1.

Structurei

3D structure databases

ProteinModelPortaliD8Q478.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiD8Q478.
KOiK01176.
OrthoDBiEOG7RBZJ4.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Fragment.

D8Q478-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFSDLHKRFA NVFRPGHRRT QSAARPTGGG GATPAAAAPP PAAHHAAGPG
60 70 80 90 100
LSRMRLGTED DPEQNPLMIE FFTWDALRDD MSWWQHLEQE LPEMARMGIT
110 120 130 140 150
QVWIPPPNKA AAKTGRGYDA YDIWDLGEFD QKGMVRTRWG SKEELLRACR
160 170 180 190 200
TAKQVKVDVI VDAVINHKLG ADRVETFPAV RVDTQNRLKE LSKVHEIEGW
210 220 230 240 250
TAFDFPGRGD KVGFTSYTGL DWDQRTQQQG IYRIAGKGHH GWSRNVGTEF
260 270 280 290 300
GNYDYLLGVD IDHRHPEVQE DFLRWGPWML ETLGAAGFRI DAAKHIDYKF
310 320 330 340 350
MLQWITATRR NAQEPRMFCV CEFWSGDVKL ILPYIRAFKG EAVFFDVPLH
360 370 380 390 400
MRLCEASRKR ERYDLRDLMS STLARLRPGD AVTFVDNHDT VEGMDLESWV
410 420 430 440 450
EENFKIQAYA LILLRPEGYP CIFYGDLYPN KKCYNANTAA NLRRLIEARR
460 470 480 490 500
LYAYGPVQDY NAGKNCIGFV RGGTGRHPGC VVLLSNRDEA GPLHTIRMNV
510 520 530 540
GPARAGAIYR SYMTQGGEVQ IDAHGWGEFS CFANAVQVWV PAA
Length:543
Mass (Da):61,503
Last modified:October 5, 2010 - v1
Checksum:i69CA72DC030A44CD
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei543 – 5431Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377306 Genomic DNA. Translation: EFI96752.1.
RefSeqiXP_003031655.1. XM_003031609.1.

Genome annotation databases

GeneIDi9589433.
KEGGiscm:SCHCODRAFT_108800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377306 Genomic DNA. Translation: EFI96752.1.
RefSeqiXP_003031655.1. XM_003031609.1.

3D structure databases

ProteinModelPortaliD8Q478.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi578458.XP_003031655.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi9589433.
KEGGiscm:SCHCODRAFT_108800.

Phylogenomic databases

InParanoidiD8Q478.
KOiK01176.
OrthoDBiEOG7RBZJ4.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210Imported.

Entry informationi

Entry nameiD8Q478_SCHCM
AccessioniPrimary (citable) accession number: D8Q478
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 24, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.