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D8Q0I4 (D8Q0I4_SCHCM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1065 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
D8Q0I4 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: E93BF5EC34468B3E

FASTA1,065120,578
        10         20         30         40         50         60 
MQATPAPTEA PGSPQPSQTT ASQQPFPEQP YNTDTLPFHI LTAFFEKLQG ERKQEKRRKL 

        70         80         90        100        110        120 
LNHWFNKWRE DNGPDLYPVL RLILPHRDRE RNVYGLKEKA LAKLYIKVIP LNKNDPDAMR 

       130        140        150        160        170        180 
LLYWKKPTEK HASTCASSAA SGDFPTVLYE VVSKRSSVTQ STLTIDDIND MLDQLADMSN 

       190        200        210        220        230        240 
KSEKQSKIIQ RLYNEATPEQ QLWFARIILK DMNISVKETT VFAVFHPDAQ ALYNTCSDLK 

       250        260        270        280        290        300 
KVAWQLADPS IRLHEDEKQV KLGQPFMPML CKRPMKRIED TAQEMDGSEF IIEEKLDGER 

       310        320        330        340        350        360 
MQLHKMGNQY YYSSRKGKDY TYLYGSHVGA GSLTPYIAHR FHKQADSAIL DGEMLVWDPI 

       370        380        390        400        410        420 
SGRNLPFGTL KTAALDQSKK QAAPRPCLKV FDLLYLNGKS LIDKSTAFRK KNMRLVIEAL 

       430        440        450        460        470        480 
PGRIEFVDEF KGRTAQDIRE KMDEVMANRG EGLVIKHPKS QYVLNGRNND WIKVKPEYMD 

       490        500        510        520        530        540 
NMGETVDVLV VAGNYGSGRR SGGVSTLICA VFDDRNTGSF NENESKYATF VRVGSGLTYA 

       550        560        570        580        590        600 
DYMWLRAKNW KTWDAKNSPT YLQTAKRSHE DKGDVYLEYE DTFILKVKAA EITPSDQYHV 

       610        620        630        640        650        660 
RYTMRFPRAL SIREEMAPGD CMTASAVVEQ LKTAKKRKME TNKVSSTKKR KVVKKKVEML 

       670        680        690        700        710        720 
PRFDGPDMKD VKEESDLFKG MKFVVISDPK ARTGEEDRKK LMKLIRSHGG QCPQFAKDPA 

       730        740        750        760        770        780 
AIVVYNGTST PYDLQLIIRK DTNDVVRPQW VMDCIAKGEL VPMEKKYFFF ATTARKETAE 

       790        800        810        820        830        840 
YGEDGGAESS GSVTQESSDD EAAAETSQSS KKRKRAGKSA EPETQDKTAD EEKATPAPSK 

       850        860        870        880        890        900 
PKVDLDPGLA AWLGYDEDDA AGVEDDAGEK DERGGRDDVE SDNDSDNQDV KDEEEEDDMA 

       910        920        930        940        950        960 
FWFNEDDGDD SATATLPTQK TTQSTADTQK GDDAPTTQPE VKMGDDNAMH YDEELIFKYL 

       970        980        990       1000       1010       1020 
CFYLDSPSNA RASGMSVKST AHEDEINESF EELRSKIESN GGRVVDLSEP KLTHVVLDKR 

      1030       1040       1050       1060 
DLSRRIDLMR RTSKPKRRHL VLTAYIDACL EENTLLDEDG ELGHA 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL377305 Genomic DNA. Translation: EFI97745.1.
RefSeqXP_003032648.1. XM_003032602.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9590663.
KEGGscm:SCHCODRAFT_53697.

Phylogenomic databases

KOK10777.
OrthoDBEOG7QC84G.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8Q0I4_SCHCM
AccessionPrimary (citable) accession number: D8Q0I4
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 13, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)