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D8Q0I4

- D8Q0I4_SCHCM

UniProt

D8Q0I4 - D8Q0I4_SCHCM

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Protein
DNA ligase
Gene
SCHCODRAFT_53697
Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SCHCODRAFT_53697Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10777.
OrthoDBiEOG7QC84G.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8Q0I4-1 [UniParc]FASTAAdd to Basket

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MQATPAPTEA PGSPQPSQTT ASQQPFPEQP YNTDTLPFHI LTAFFEKLQG     50
ERKQEKRRKL LNHWFNKWRE DNGPDLYPVL RLILPHRDRE RNVYGLKEKA 100
LAKLYIKVIP LNKNDPDAMR LLYWKKPTEK HASTCASSAA SGDFPTVLYE 150
VVSKRSSVTQ STLTIDDIND MLDQLADMSN KSEKQSKIIQ RLYNEATPEQ 200
QLWFARIILK DMNISVKETT VFAVFHPDAQ ALYNTCSDLK KVAWQLADPS 250
IRLHEDEKQV KLGQPFMPML CKRPMKRIED TAQEMDGSEF IIEEKLDGER 300
MQLHKMGNQY YYSSRKGKDY TYLYGSHVGA GSLTPYIAHR FHKQADSAIL 350
DGEMLVWDPI SGRNLPFGTL KTAALDQSKK QAAPRPCLKV FDLLYLNGKS 400
LIDKSTAFRK KNMRLVIEAL PGRIEFVDEF KGRTAQDIRE KMDEVMANRG 450
EGLVIKHPKS QYVLNGRNND WIKVKPEYMD NMGETVDVLV VAGNYGSGRR 500
SGGVSTLICA VFDDRNTGSF NENESKYATF VRVGSGLTYA DYMWLRAKNW 550
KTWDAKNSPT YLQTAKRSHE DKGDVYLEYE DTFILKVKAA EITPSDQYHV 600
RYTMRFPRAL SIREEMAPGD CMTASAVVEQ LKTAKKRKME TNKVSSTKKR 650
KVVKKKVEML PRFDGPDMKD VKEESDLFKG MKFVVISDPK ARTGEEDRKK 700
LMKLIRSHGG QCPQFAKDPA AIVVYNGTST PYDLQLIIRK DTNDVVRPQW 750
VMDCIAKGEL VPMEKKYFFF ATTARKETAE YGEDGGAESS GSVTQESSDD 800
EAAAETSQSS KKRKRAGKSA EPETQDKTAD EEKATPAPSK PKVDLDPGLA 850
AWLGYDEDDA AGVEDDAGEK DERGGRDDVE SDNDSDNQDV KDEEEEDDMA 900
FWFNEDDGDD SATATLPTQK TTQSTADTQK GDDAPTTQPE VKMGDDNAMH 950
YDEELIFKYL CFYLDSPSNA RASGMSVKST AHEDEINESF EELRSKIESN 1000
GGRVVDLSEP KLTHVVLDKR DLSRRIDLMR RTSKPKRRHL VLTAYIDACL 1050
EENTLLDEDG ELGHA 1065
Length:1,065
Mass (Da):120,578
Last modified:October 5, 2010 - v1
Checksum:iE93BF5EC34468B3E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377305 Genomic DNA. Translation: EFI97745.1.
RefSeqiXP_003032648.1. XM_003032602.1.

Genome annotation databases

GeneIDi9590663.
KEGGiscm:SCHCODRAFT_53697.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377305 Genomic DNA. Translation: EFI97745.1 .
RefSeqi XP_003032648.1. XM_003032602.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9590663.
KEGGi scm:SCHCODRAFT_53697.

Phylogenomic databases

KOi K10777.
OrthoDBi EOG7QC84G.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210.

Entry informationi

Entry nameiD8Q0I4_SCHCM
AccessioniPrimary (citable) accession number: D8Q0I4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 13, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi