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D8PQ82

- D8PQ82_SCHCM

UniProt

D8PQ82 - D8PQ82_SCHCM

Protein

DNA ligase

Gene

SCHCODRAFT_46359

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:SCHCODRAFT_46359Imported
    OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
    Taxonomic identifieri578458 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
    ProteomesiUP000007431: Unassembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    D8PQ82-1 [UniParc]FASTAAdd to Basket

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    QGSGTFFAMP KSAKATPPQQ ASLKEMWGKK KASTSAKSAK DASDSANSEV    50
    KPSKPASGAC AYTEDELRPE TSTGEKTAKA IESDDEEAPT SSQKATSKKT 100
    SLKQTKTKKD KATAADSKSE GRRRPKKASE KAAPATSDAE PDAEASVPPS 150
    SDVEAAEEEE DEDDEALLED EEGEGAATRA VAAKAAEAAL ARTSDVDIKG 200
    GWKVGDPVPY AALTKTFSHI ESTTKRLEKN AFLTAFLTLV IQRSAPNDHN 250
    SLLQAVYLCI NRLSPDYIGI ELGIGESLLI KAISESTGRN AGLIKADLKK 300
    EGDLGLVAMN SKNSQRTLFK PKPLTLPFVF SNLKEIALSS GHSSQTKKVS 350
    IITKLLAACQ DFEAKYIVRS LEGKLRIGNA ERSVLVALAH AAVLAENAKR 400
    DRKLHGEKLA ARLEESTNIV KAVYSELPSY DKVIPALLDH GIDGLREHCK 450
    LSPGVPLKPM LAKPTKAIGE VLDRFENKRF TCEYKYDGER AQVHLMEDGK 500
    IAVFSRNSED MSKKYPDLME QIPRCIKDST KSFVLDAEAV AIDRTTGKLM 550
    PFQELSKRKR KDVKVEDIQV KVCLFAFDLL YLNGEPLLQK SLAERRVLLR 600
    ESFQIVESEF QFAKSTDSET VEEIQTFLEE SVKDGCEGLM VKMLESDASY 650
    YEPSRRSINW LKLKKDYLAG VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC 700
    YDADSEEYQT ICKIGTGFSE EALQSHYNVL KPLEMEKPRG DIKVGGAKPD 750
    IWFEPKVVWE VLTADLSLSP VYTAAMGLVD ERGISLRFPR FIRIRDDKNA 800
    DNATGCEQVA EMYERQALAQ GGGKKGKVVD DFW 833
    Length:833
    Mass (Da):91,459
    Last modified:October 5, 2010 - v1
    Checksum:iE158BA119061F7C2
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377302 Genomic DNA. Translation: EFJ03730.1.
    RefSeqiXP_003038632.1. XM_003038586.1.

    Genome annotation databases

    GeneIDi9584930.
    KEGGiscm:SCHCODRAFT_46359.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL377302 Genomic DNA. Translation: EFJ03730.1 .
    RefSeqi XP_003038632.1. XM_003038586.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9584930.
    KEGGi scm:SCHCODRAFT_46359.

    Phylogenomic databases

    KOi K10747.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: H4-8 / FGSC 9210Imported.

    Entry informationi

    Entry nameiD8PQ82_SCHCM
    AccessioniPrimary (citable) accession number: D8PQ82
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3