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D8PQ82

- D8PQ82_SCHCM

UniProt

D8PQ82 - D8PQ82_SCHCM

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Protein

DNA ligase

Gene

SCHCODRAFT_46359

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SCHCODRAFT_46359Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD8PQ82.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D8PQ82-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
QGSGTFFAMP KSAKATPPQQ ASLKEMWGKK KASTSAKSAK DASDSANSEV
60 70 80 90 100
KPSKPASGAC AYTEDELRPE TSTGEKTAKA IESDDEEAPT SSQKATSKKT
110 120 130 140 150
SLKQTKTKKD KATAADSKSE GRRRPKKASE KAAPATSDAE PDAEASVPPS
160 170 180 190 200
SDVEAAEEEE DEDDEALLED EEGEGAATRA VAAKAAEAAL ARTSDVDIKG
210 220 230 240 250
GWKVGDPVPY AALTKTFSHI ESTTKRLEKN AFLTAFLTLV IQRSAPNDHN
260 270 280 290 300
SLLQAVYLCI NRLSPDYIGI ELGIGESLLI KAISESTGRN AGLIKADLKK
310 320 330 340 350
EGDLGLVAMN SKNSQRTLFK PKPLTLPFVF SNLKEIALSS GHSSQTKKVS
360 370 380 390 400
IITKLLAACQ DFEAKYIVRS LEGKLRIGNA ERSVLVALAH AAVLAENAKR
410 420 430 440 450
DRKLHGEKLA ARLEESTNIV KAVYSELPSY DKVIPALLDH GIDGLREHCK
460 470 480 490 500
LSPGVPLKPM LAKPTKAIGE VLDRFENKRF TCEYKYDGER AQVHLMEDGK
510 520 530 540 550
IAVFSRNSED MSKKYPDLME QIPRCIKDST KSFVLDAEAV AIDRTTGKLM
560 570 580 590 600
PFQELSKRKR KDVKVEDIQV KVCLFAFDLL YLNGEPLLQK SLAERRVLLR
610 620 630 640 650
ESFQIVESEF QFAKSTDSET VEEIQTFLEE SVKDGCEGLM VKMLESDASY
660 670 680 690 700
YEPSRRSINW LKLKKDYLAG VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC
710 720 730 740 750
YDADSEEYQT ICKIGTGFSE EALQSHYNVL KPLEMEKPRG DIKVGGAKPD
760 770 780 790 800
IWFEPKVVWE VLTADLSLSP VYTAAMGLVD ERGISLRFPR FIRIRDDKNA
810 820 830
DNATGCEQVA EMYERQALAQ GGGKKGKVVD DFW
Length:833
Mass (Da):91,459
Last modified:October 5, 2010 - v1
Checksum:iE158BA119061F7C2
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377302 Genomic DNA. Translation: EFJ03730.1.
RefSeqiXP_003038632.1. XM_003038586.1.

Genome annotation databases

GeneIDi9584930.
KEGGiscm:SCHCODRAFT_46359.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377302 Genomic DNA. Translation: EFJ03730.1 .
RefSeqi XP_003038632.1. XM_003038586.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9584930.
KEGGi scm:SCHCODRAFT_46359.

Phylogenomic databases

InParanoidi D8PQ82.
KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210Imported.

Entry informationi

Entry nameiD8PQ82_SCHCM
AccessioniPrimary (citable) accession number: D8PQ82
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 29, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3