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Protein

DNA ligase

Gene

SCHCODRAFT_46359

Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotation
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SCHCODRAFT_46359Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)Imported
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
Proteomesi
  • UP000007431 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi578458.XP_003038632.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini565 – 702DNA_LIGASE_A3InterPro annotationAdd BLAST138

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0967 Eukaryota
COG1793 LUCA
InParanoidiD8PQ82
KOiK10747
OrthoDBiEOG092C0FHN

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Fragment.

D8PQ82-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
QGSGTFFAMP KSAKATPPQQ ASLKEMWGKK KASTSAKSAK DASDSANSEV
60 70 80 90 100
KPSKPASGAC AYTEDELRPE TSTGEKTAKA IESDDEEAPT SSQKATSKKT
110 120 130 140 150
SLKQTKTKKD KATAADSKSE GRRRPKKASE KAAPATSDAE PDAEASVPPS
160 170 180 190 200
SDVEAAEEEE DEDDEALLED EEGEGAATRA VAAKAAEAAL ARTSDVDIKG
210 220 230 240 250
GWKVGDPVPY AALTKTFSHI ESTTKRLEKN AFLTAFLTLV IQRSAPNDHN
260 270 280 290 300
SLLQAVYLCI NRLSPDYIGI ELGIGESLLI KAISESTGRN AGLIKADLKK
310 320 330 340 350
EGDLGLVAMN SKNSQRTLFK PKPLTLPFVF SNLKEIALSS GHSSQTKKVS
360 370 380 390 400
IITKLLAACQ DFEAKYIVRS LEGKLRIGNA ERSVLVALAH AAVLAENAKR
410 420 430 440 450
DRKLHGEKLA ARLEESTNIV KAVYSELPSY DKVIPALLDH GIDGLREHCK
460 470 480 490 500
LSPGVPLKPM LAKPTKAIGE VLDRFENKRF TCEYKYDGER AQVHLMEDGK
510 520 530 540 550
IAVFSRNSED MSKKYPDLME QIPRCIKDST KSFVLDAEAV AIDRTTGKLM
560 570 580 590 600
PFQELSKRKR KDVKVEDIQV KVCLFAFDLL YLNGEPLLQK SLAERRVLLR
610 620 630 640 650
ESFQIVESEF QFAKSTDSET VEEIQTFLEE SVKDGCEGLM VKMLESDASY
660 670 680 690 700
YEPSRRSINW LKLKKDYLAG VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC
710 720 730 740 750
YDADSEEYQT ICKIGTGFSE EALQSHYNVL KPLEMEKPRG DIKVGGAKPD
760 770 780 790 800
IWFEPKVVWE VLTADLSLSP VYTAAMGLVD ERGISLRFPR FIRIRDDKNA
810 820 830
DNATGCEQVA EMYERQALAQ GGGKKGKVVD DFW
Length:833
Mass (Da):91,459
Last modified:October 5, 2010 - v1
Checksum:iE158BA119061F7C2
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377302 Genomic DNA Translation: EFJ03730.1
RefSeqiXP_003038632.1, XM_003038586.1

Genome annotation databases

EnsemblFungiiEFJ03730; EFJ03730; SCHCODRAFT_46359
GeneIDi9584930
KEGGiscm:SCHCODRAFT_46359

Similar proteinsi

Entry informationi

Entry nameiD8PQ82_SCHCM
AccessioniPrimary (citable) accession number: D8PQ82
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 23, 2018
This is version 31 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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