D8PQ82 (D8PQ82_SCHCM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

ORF Names:

SCHCODRAFT_46359 EMBL EFJ03730.1

Organism

Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus) [Complete proteome]

Taxonomic identifier

578458 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Basidiomycota › Agaricomycotina › Agaricomycetes › Agaricomycetidae › Agaricales › Schizophyllaceae › Schizophyllum › Schizophyllum commune

Protein attributes

Sequence length	833 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL EFJ03730.1

Sequences

	Sequence		Length	Mass (Da)
	D8PQ82 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: E158BA119061F7C2	FASTA	833	91,459
	10 20 30 40 50 60 QGSGTFFAMP KSAKATPPQQ ASLKEMWGKK KASTSAKSAK DASDSANSEV KPSKPASGAC 70 80 90 100 110 120 AYTEDELRPE TSTGEKTAKA IESDDEEAPT SSQKATSKKT SLKQTKTKKD KATAADSKSE 130 140 150 160 170 180 GRRRPKKASE KAAPATSDAE PDAEASVPPS SDVEAAEEEE DEDDEALLED EEGEGAATRA 190 200 210 220 230 240 VAAKAAEAAL ARTSDVDIKG GWKVGDPVPY AALTKTFSHI ESTTKRLEKN AFLTAFLTLV 250 260 270 280 290 300 IQRSAPNDHN SLLQAVYLCI NRLSPDYIGI ELGIGESLLI KAISESTGRN AGLIKADLKK 310 320 330 340 350 360 EGDLGLVAMN SKNSQRTLFK PKPLTLPFVF SNLKEIALSS GHSSQTKKVS IITKLLAACQ 370 380 390 400 410 420 DFEAKYIVRS LEGKLRIGNA ERSVLVALAH AAVLAENAKR DRKLHGEKLA ARLEESTNIV 430 440 450 460 470 480 KAVYSELPSY DKVIPALLDH GIDGLREHCK LSPGVPLKPM LAKPTKAIGE VLDRFENKRF 490 500 510 520 530 540 TCEYKYDGER AQVHLMEDGK IAVFSRNSED MSKKYPDLME QIPRCIKDST KSFVLDAEAV 550 560 570 580 590 600 AIDRTTGKLM PFQELSKRKR KDVKVEDIQV KVCLFAFDLL YLNGEPLLQK SLAERRVLLR 610 620 630 640 650 660 ESFQIVESEF QFAKSTDSET VEEIQTFLEE SVKDGCEGLM VKMLESDASY YEPSRRSINW 670 680 690 700 710 720 LKLKKDYLAG VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC YDADSEEYQT ICKIGTGFSE 730 740 750 760 770 780 EALQSHYNVL KPLEMEKPRG DIKVGGAKPD IWFEPKVVWE VLTADLSLSP VYTAAMGLVD 790 800 810 820 830 ERGISLRFPR FIRIRDDKNA DNATGCEQVA EMYERQALAQ GGGKKGKVVD DFW

References

[1]

"Genome sequence of the model mushroom Schizophyllum commune." Ohm R.A., de Jong J.F., Lugones L.G., Aerts A., Kothe E., Stajich J.E., de Vries R.P., Record E., Levasseur A., Baker S.E., Bartholomew K.A., Coutinho P.M., Erdmann S., Fowler T.J., Gathman A.C., Lombard V., Henrissat B., Knabe N. , Kuees U., Lilly W.W., Lindquist E., Lucas S., Magnuson J.K., Piumi F., Raudaskoski M., Salamov A., Schmutz J., Schwarze F.W.M.R., vanKuyk P.A., Horton J.S., Grigoriev I.V., Woesten H.A.B. Nat. Biotechnol. 28:957-963(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: H4-8 / FGSC 9210.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL377302 Genomic DNA. Translation: EFJ03730.1.
RefSeq	XP_003038632.1. XM_003038586.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9584930.
KEGG	scm:SCHCODRAFT_46359.
Phylogenomic databases
KO	K10747.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8PQ82_SCHCM

Accession

Primary (citable) accession number: D8PQ82

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	March 6, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)