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D8PQ82 (D8PQ82_SCHCM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length833 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL EFJ03730.1

Sequences

Sequence LengthMass (Da)Tools
D8PQ82 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: E158BA119061F7C2

FASTA83391,459
        10         20         30         40         50         60 
QGSGTFFAMP KSAKATPPQQ ASLKEMWGKK KASTSAKSAK DASDSANSEV KPSKPASGAC 

        70         80         90        100        110        120 
AYTEDELRPE TSTGEKTAKA IESDDEEAPT SSQKATSKKT SLKQTKTKKD KATAADSKSE 

       130        140        150        160        170        180 
GRRRPKKASE KAAPATSDAE PDAEASVPPS SDVEAAEEEE DEDDEALLED EEGEGAATRA 

       190        200        210        220        230        240 
VAAKAAEAAL ARTSDVDIKG GWKVGDPVPY AALTKTFSHI ESTTKRLEKN AFLTAFLTLV 

       250        260        270        280        290        300 
IQRSAPNDHN SLLQAVYLCI NRLSPDYIGI ELGIGESLLI KAISESTGRN AGLIKADLKK 

       310        320        330        340        350        360 
EGDLGLVAMN SKNSQRTLFK PKPLTLPFVF SNLKEIALSS GHSSQTKKVS IITKLLAACQ 

       370        380        390        400        410        420 
DFEAKYIVRS LEGKLRIGNA ERSVLVALAH AAVLAENAKR DRKLHGEKLA ARLEESTNIV 

       430        440        450        460        470        480 
KAVYSELPSY DKVIPALLDH GIDGLREHCK LSPGVPLKPM LAKPTKAIGE VLDRFENKRF 

       490        500        510        520        530        540 
TCEYKYDGER AQVHLMEDGK IAVFSRNSED MSKKYPDLME QIPRCIKDST KSFVLDAEAV 

       550        560        570        580        590        600 
AIDRTTGKLM PFQELSKRKR KDVKVEDIQV KVCLFAFDLL YLNGEPLLQK SLAERRVLLR 

       610        620        630        640        650        660 
ESFQIVESEF QFAKSTDSET VEEIQTFLEE SVKDGCEGLM VKMLESDASY YEPSRRSINW 

       670        680        690        700        710        720 
LKLKKDYLAG VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC YDADSEEYQT ICKIGTGFSE 

       730        740        750        760        770        780 
EALQSHYNVL KPLEMEKPRG DIKVGGAKPD IWFEPKVVWE VLTADLSLSP VYTAAMGLVD 

       790        800        810        820        830 
ERGISLRFPR FIRIRDDKNA DNATGCEQVA EMYERQALAQ GGGKKGKVVD DFW 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL377302 Genomic DNA. Translation: EFJ03730.1.
RefSeqXP_003038632.1. XM_003038586.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9584930.
KEGGscm:SCHCODRAFT_46359.

Phylogenomic databases

KOK10747.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8PQ82_SCHCM
AccessionPrimary (citable) accession number: D8PQ82
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 13, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)