SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

D8PQ82

- D8PQ82_SCHCM

UniProt

D8PQ82 - D8PQ82_SCHCM

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
DNA ligase
Gene
SCHCODRAFT_46359
Organism
Schizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SCHCODRAFT_46359Imported
OrganismiSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
Taxonomic identifieri578458 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesSchizophyllaceaeSchizophyllum
ProteomesiUP000007431: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D8PQ82-1 [UniParc]FASTAAdd to Basket

« Hide

QGSGTFFAMP KSAKATPPQQ ASLKEMWGKK KASTSAKSAK DASDSANSEV    50
KPSKPASGAC AYTEDELRPE TSTGEKTAKA IESDDEEAPT SSQKATSKKT 100
SLKQTKTKKD KATAADSKSE GRRRPKKASE KAAPATSDAE PDAEASVPPS 150
SDVEAAEEEE DEDDEALLED EEGEGAATRA VAAKAAEAAL ARTSDVDIKG 200
GWKVGDPVPY AALTKTFSHI ESTTKRLEKN AFLTAFLTLV IQRSAPNDHN 250
SLLQAVYLCI NRLSPDYIGI ELGIGESLLI KAISESTGRN AGLIKADLKK 300
EGDLGLVAMN SKNSQRTLFK PKPLTLPFVF SNLKEIALSS GHSSQTKKVS 350
IITKLLAACQ DFEAKYIVRS LEGKLRIGNA ERSVLVALAH AAVLAENAKR 400
DRKLHGEKLA ARLEESTNIV KAVYSELPSY DKVIPALLDH GIDGLREHCK 450
LSPGVPLKPM LAKPTKAIGE VLDRFENKRF TCEYKYDGER AQVHLMEDGK 500
IAVFSRNSED MSKKYPDLME QIPRCIKDST KSFVLDAEAV AIDRTTGKLM 550
PFQELSKRKR KDVKVEDIQV KVCLFAFDLL YLNGEPLLQK SLAERRVLLR 600
ESFQIVESEF QFAKSTDSET VEEIQTFLEE SVKDGCEGLM VKMLESDASY 650
YEPSRRSINW LKLKKDYLAG VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC 700
YDADSEEYQT ICKIGTGFSE EALQSHYNVL KPLEMEKPRG DIKVGGAKPD 750
IWFEPKVVWE VLTADLSLSP VYTAAMGLVD ERGISLRFPR FIRIRDDKNA 800
DNATGCEQVA EMYERQALAQ GGGKKGKVVD DFW 833
Length:833
Mass (Da):91,459
Last modified:October 5, 2010 - v1
Checksum:iE158BA119061F7C2
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377302 Genomic DNA. Translation: EFJ03730.1.
RefSeqiXP_003038632.1. XM_003038586.1.

Genome annotation databases

GeneIDi9584930.
KEGGiscm:SCHCODRAFT_46359.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GL377302 Genomic DNA. Translation: EFJ03730.1 .
RefSeqi XP_003038632.1. XM_003038586.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9584930.
KEGGi scm:SCHCODRAFT_46359.

Phylogenomic databases

KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H4-8 / FGSC 9210.

Entry informationi

Entry nameiD8PQ82_SCHCM
AccessioniPrimary (citable) accession number: D8PQ82
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 13, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi