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D8PGT0 (D8PGT0_9BACT) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase HAMAP-Rule MF_01201 RuleBase RU000608
EC=5.1.1.1 HAMAP-Rule MF_01201 RuleBase RU000608
Gene names
Name:alr EMBL CBK42467.1
ORF Names:NIDE2761 EMBL CBK42467.1
OrganismCandidatus Nitrospira defluvii EMBL CBK42467.1
Taxonomic identifier330214 [NCBI]
Taxonomic lineageBacteria › Nitrospirae › Nitrospirales › Nitrospiraceae › Nitrospira

Protein attributes

Sequence length387 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site401Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2671Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1381Substrate By similarity HAMAP-Rule MF_01201
Binding site3151Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue401N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D8PGT0 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 5DDD96A5DA66AA5A

FASTA38742,140
        10         20         30         40         50         60 
MYTPSQFPPT SVSVDLNALG HNLAHVRRLA PRSEVLAVVK ANAYGHGALE LTRTLQQLAV 

        70         80         90        100        110        120 
HRFGVATVDE GIVLRQAGIH DPILVMGPTV PAQFPDLIAH RLTPVLYRSD MVQAFAAAVP 

       130        140        150        160        170        180 
PKAAPYSVHV KIETGMGRLG VHPPEMPDLA AMPAFRATLR LEGLMTHLAD ADNTKTTHTE 

       190        200        210        220        230        240 
TQLTEFQQTL DTLRQGGLSC PLIHAANSAG IIQYPASLYT LVRPGIMLYG YHTLSNETPA 

       250        260        270        280        290        300 
PELRPILTWK ATIAHLHNIQ AGDSVSYNRT FIAARRSKIA VLPVGYADGY NRLLSNRGMV 

       310        320        330        340        350        360 
LIGGRRVPVV GRVCMDMTMV DVTDVPGVHI GQEAILIGQQ GQERLTAADL AAWQQTIPYE 

       370        380 
VLCAIGQRVP RHYLPLRSDN EKSSPKP

« Hide

References

[1]"A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria."
Lucker S., Wagner M., Maixner F., Pelletier E., Koch H., Vacherie B., Rattei T., Sinninghe Damste J., Spieck E., Le Paslier D., Daims H.
Proc. Natl. Acad. Sci. U.S.A. 0:0-0(2010)
Cited for: NUCLEOTIDE SEQUENCE.
[2]Genoscope - CEA
Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FP929003 Genomic DNA. Translation: CBK42467.1.
RefSeqYP_003798392.1. NC_014355.1.

3D structure databases

ProteinModelPortalD8PGT0.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBK42467; CBK42467; NIDE2761.
GeneID9486037.
KEGGnde:NIDE2761.
PATRIC42244483. VBICanNit28252_2622.

Phylogenomic databases

HOGENOMHOG000031444.
KOK01775.

Enzyme and pathway databases

BioCycNDEF330214:GI4U-2715-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8PGT0_9BACT
AccessionPrimary (citable) accession number: D8PGT0
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 29, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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