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Protein
Submitted name:

Rlp protein

Gene

rlp

Organism
Candidatus Nitrospira defluvii
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciNDEF330214:GI4U-1849-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Rlp proteinImported
Gene namesi
Name:rlpImported
ORF Names:NIDE1881Imported
OrganismiCandidatus Nitrospira defluviiImported
Taxonomic identifieri330214 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeNitrospira
ProteomesiUP000001660 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi330214.NIDE1881.

Structurei

3D structure databases

ProteinModelPortaliD8PEE9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000230274.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.

Sequencei

Sequence statusi: Complete.

D8PEE9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYRLHGSAA DARRRADLLC IDQTVEAADH VIPSGAIRDQ LLGRVIQLEV
60 70 80 90 100
ITPDSHRAVL SFPVELLDGT MSALLHMIIG MAGLQGQIRV TDLSLPDAVA
110 120 130 140 150
SRWTRPRYGS RGLRDLLRVP RRPLICAVLK PLGYSPQQLA DLAHEFALGE
160 170 180 190 200
VDLIKDDQSL RDHPFCRFDE RIARCAEAIA KASRQTGKRC LYAPHISGPW
210 220 230 240 250
PSLVEQAAKA MQAGARALLL CPGLIGFDAV ASLAQLSSLS LPLLAHPDFL
260 270 280 290 300
GSHYVTPDSG IAPAMLFGLL PRLAGADVTI YPTYGLNYPI SEEDCRQIAA
310 320 330 340 350
ACRRALGGCP PILPTAAGRM TASRIREMVT LYGSDIVFIL GSDLRRGPTP
360 370
IRSACLDFRR LVEAETCSSP
Length:370
Mass (Da):40,145
Last modified:October 5, 2010 - v1
Checksum:iE3BF284A07D3F158
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP929003 Genomic DNA. Translation: CBK41608.1.
RefSeqiWP_013248432.1. NC_014355.1.
YP_003797533.1. NC_014355.1.

Genome annotation databases

EnsemblBacteriaiCBK41608; CBK41608; NIDE1881.
KEGGinde:NIDE1881.
PATRICi42242777. VBICanNit28252_1774.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP929003 Genomic DNA. Translation: CBK41608.1.
RefSeqiWP_013248432.1. NC_014355.1.
YP_003797533.1. NC_014355.1.

3D structure databases

ProteinModelPortaliD8PEE9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi330214.NIDE1881.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBK41608; CBK41608; NIDE1881.
KEGGinde:NIDE1881.
PATRICi42242777. VBICanNit28252_1774.

Phylogenomic databases

HOGENOMiHOG000230274.
KOiK01601.

Enzyme and pathway databases

BioCyciNDEF330214:GI4U-1849-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProiIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria."
    Lucker S., Wagner M., Maixner F., Pelletier E., Koch H., Vacherie B., Rattei T., Sinninghe Damste J., Spieck E., Le Paslier D., Daims H.
    Proc. Natl. Acad. Sci. U.S.A. 0:0-0(2010)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiD8PEE9_9BACT
AccessioniPrimary (citable) accession number: D8PEE9
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 24, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.