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D8PEE9 (D8PEE9_9BACT) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:rlp EMBL CBK41608.1
ORF Names:NIDE1881 EMBL CBK41608.1
OrganismCandidatus Nitrospira defluvii [Complete proteome] EMBL CBK41608.1
Taxonomic identifier330214 [NCBI]
Taxonomic lineageBacteriaNitrospiraeNitrospiralesNitrospiraceaeNitrospira

Protein attributes

Sequence length370 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D8PEE9 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: E3BF284A07D3F158

FASTA37040,145
        10         20         30         40         50         60 
MEYRLHGSAA DARRRADLLC IDQTVEAADH VIPSGAIRDQ LLGRVIQLEV ITPDSHRAVL 

        70         80         90        100        110        120 
SFPVELLDGT MSALLHMIIG MAGLQGQIRV TDLSLPDAVA SRWTRPRYGS RGLRDLLRVP 

       130        140        150        160        170        180 
RRPLICAVLK PLGYSPQQLA DLAHEFALGE VDLIKDDQSL RDHPFCRFDE RIARCAEAIA 

       190        200        210        220        230        240 
KASRQTGKRC LYAPHISGPW PSLVEQAAKA MQAGARALLL CPGLIGFDAV ASLAQLSSLS 

       250        260        270        280        290        300 
LPLLAHPDFL GSHYVTPDSG IAPAMLFGLL PRLAGADVTI YPTYGLNYPI SEEDCRQIAA 

       310        320        330        340        350        360 
ACRRALGGCP PILPTAAGRM TASRIREMVT LYGSDIVFIL GSDLRRGPTP IRSACLDFRR 

       370 
LVEAETCSSP 

« Hide

References

[1]"A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria."
Lucker S., Wagner M., Maixner F., Pelletier E., Koch H., Vacherie B., Rattei T., Sinninghe Damste J., Spieck E., Le Paslier D., Daims H.
Proc. Natl. Acad. Sci. U.S.A. 0:0-0(2010)
Cited for: NUCLEOTIDE SEQUENCE.
[2]Genoscope - CEA
Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP929003 Genomic DNA. Translation: CBK41608.1.
RefSeqYP_003797533.1. NC_014355.1.

3D structure databases

ProteinModelPortalD8PEE9.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBK41608; CBK41608; NIDE1881.
GeneID9483805.
KEGGnde:NIDE1881.
PATRIC42242777. VBICanNit28252_1774.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000230274.
KOK01601.

Enzyme and pathway databases

BioCycNDEF330214:GI4U-1849-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8PEE9_9BACT
AccessionPrimary (citable) accession number: D8PEE9
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 22, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)