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D8NZI3 (D8NZI3_RALSL) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Isocitrate dehydrogenase [NADP] RuleBase RU004446
EC=1.1.1.42 RuleBase RU004446
Gene names
Name:icd EMBL CBJ50336.1
ORF Names:RPSI07_0976 EMBL CBJ50336.1
OrganismRalstonia solanacearum (Pseudomonas solanacearum) [Complete proteome] [HAMAP] EMBL CBJ50336.1
Taxonomic identifier305 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Ralstonia

Protein attributes

Sequence length416 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH. RuleBase RU004446

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. RuleBase RU004446

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Sequences

Sequence LengthMass (Da)Tools
D8NZI3 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: CEBC39AEC915A5E9

FASTA41645,696
        10         20         30         40         50         60 
MYQHIKVPAG EKITVNQDFS LNVPDNPIIP YIEGDGTGFD ITPVMIKVVD AAVAKAYAGK 

        70         80         90        100        110        120 
RKISWMEIYA GEKSTKVYGP DVWLPEETLQ VLKDYVVSIK GPLTTPVGGG IRSLNVALRQ 

       130        140        150        160        170        180 
ELDLYVCLRP VRYFKGVPSP VREPEKTDMV IFRENSEDIY AGIEWAAESE QAKKVIAFLR 

       190        200        210        220        230        240 
NEMGVKKIRF PETSGIGIKP VSKEGTQRLV RKAIQYAIDN DKPSVTIVHK GNIMKFTEGG 

       250        260        270        280        290        300 
FRDWAYELAQ KEFGAELIDG GPWCKFKNPK TGKDIIVKDA IADAFLQQIL LRPAEYSVVA 

       310        320        330        340        350        360 
TLNLNGDYIS DALAAQVGGI GIAPGANLSD SVAMFEATHG TAPKYAGKDY VNPGSEILSA 

       370        380        390        400        410 
EMMLRHMGWT EAADLIISSI EKSILSKKVT YDFARLLEGA TQVSCSGFGQ VMIDNM

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References

[1]"Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence."
Remenant B., Coupat-Goutaland B., Guidot A., Cellier G., Wicker E., Allen C., Fegan M., Pruvost O., Elbaz M., Calteau A., Salvignol G., Mornico D., Mangenot S., Barbe V., Medigue C., Prior P.
BMC Genomics 11:379-379(2010)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PSI07 EMBL CBJ50336.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FP885906 Genomic DNA. Translation: CBJ50336.1.
RefSeqYP_003751635.1. NC_014311.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBJ50336; CBJ50336; RPSI07_0976.
GeneID9407962.
KEGGrsl:RPSI07_0976.
PATRIC42538081. VBIRalSol167236_2650.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000021113.
KOK00031.

Enzyme and pathway databases

BioCycRSOL859657:GJJ9-981-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 1 hit.
InterProIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERPTHR11835. PTHR11835. 1 hit.
PfamPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsTIGR00183. prok_nadp_idh. 1 hit.
PROSITEPS00470. IDH_IMDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8NZI3_RALSL
AccessionPrimary (citable) accession number: D8NZI3
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 3, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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