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D8NY76

- D8NY76_RALSL

UniProt

D8NY76 - D8NY76_RALSL

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Protein
Submitted name: ATP dependent DNA ligase
Gene
RPSI07_2772
Organism
Ralstonia solanacearum (Pseudomonas solanacearum)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSOL859657:GJJ9-2818-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:RPSI07_2772Imported
OrganismiRalstonia solanacearum (Pseudomonas solanacearum)Imported
Taxonomic identifieri305 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
ProteomesiUP000006858: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8NY76-1 [UniParc]FASTAAdd to Basket

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MPAMPGPLDA YRRKRDFSQT REPAGEGHAT GQRGDGALRY VIQKHDATRL    50
HYDFRLELDG TLKSWAIPKG PSLDPADRRL AVHVEDHPLD YADFEGHIPE 100
DQYGGGDVIV WDRGTWRPHG DAHAAYRAGK LKFDLDGEKL HGAWTLVRTR 150
LPGSGRHPRE QWLLIKERDD QVRPSSAYDI TQALPASVIS GRDVGDGPPA 200
QNAVPTAMAP EPSRRTVDPP AGAVAAPLPA TLEPQLATLV GTPPASGTWD 250
YEAKFDGYRI LARIDGDSVQ LFSRNGRDWT ARLPRQARAL PALGLRSAWL 300
DGEAVVVNEQ GVPDFQALQN AFETAHMERI RYVLFDLPYC NGVDLRGVPL 350
RERRALLERI VEAAPGALDR EAIAYSARLD APPSQLLASA CGMSMEGIIG 400
KRADAPYRSG RGPTWIKLKC GQRQAFVIGG YSAPKGSRSG FGALLLGVYA 450
DDGALRYAGR VGTGFNQASL RALHAELRGL HTDRPPFADP PTGADARDVQ 500
WVRPERVAEI AFAEWTREGI VRQAVFQGLR DDKPARSIVR ETAGTVGTAP 550
RSTGHDVSAR PPAARPARTV RPGAERIAGV DITHPDRIIE KASGTTKADL 600
ARYYASIADW LLPHLRNRPV ALLRAPDGID GEHFFQKHIG ALQISGITQL 650
DPALDPGHAS LLTIDSVAAL IGAVQMGVVE FHTWNALADR IEQPDRIVFD 700
IDPDPALPFA RVIEATQLTL ALLDELGLRT FLKTSGGRGL HVVVPLARRT 750
PAGWEMLKAF AQAVTQHLAH TLPDRFAAKM GPQNRIGKTF VDYLRNNRGA 800
STVAACSVRA RPGLPVSVPI AHDELAGLHS AAQWNLRTLP DRLAALQADP 850
WAGYAGTRQS VTAGMRRRIG LD 872
Length:872
Mass (Da):94,899
Last modified:October 5, 2010 - v1
Checksum:iBFADFC9CD15A39A7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP885906 Genomic DNA. Translation: CBJ52137.1.

Genome annotation databases

EnsemblBacteriaiCBJ52137; CBJ52137; RPSI07_2772.
PATRICi42541717. VBIRalSol167236_4428.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP885906 Genomic DNA. Translation: CBJ52137.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBJ52137 ; CBJ52137 ; RPSI07_2772 .
PATRICi 42541717. VBIRalSol167236_4428.

Phylogenomic databases

HOGENOMi HOG000222509.

Enzyme and pathway databases

BioCyci RSOL859657:GJJ9-2818-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence."
    Remenant B., Coupat-Goutaland B., Guidot A., Cellier G., Wicker E., Allen C., Fegan M., Pruvost O., Elbaz M., Calteau A., Salvignol G., Mornico D., Mangenot S., Barbe V., Medigue C., Prior P.
    BMC Genomics 11:379-379(2010)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PSI07Imported.

Entry informationi

Entry nameiD8NY76_RALSL
AccessioniPrimary (citable) accession number: D8NY76
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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