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D8NY76 (D8NY76_RALSL) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL CBJ52137.1
EC=6.5.1.1 EMBL CBJ52137.1
Gene names
ORF Names:RPSI07_2772 EMBL CBJ52137.1
OrganismRalstonia solanacearum (Pseudomonas solanacearum) [Complete proteome] [HAMAP] EMBL CBJ52137.1
Taxonomic identifier305 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Ralstonia

Protein attributes

Sequence length872 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D8NY76 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: BFADFC9CD15A39A7

FASTA87294,899
        10         20         30         40         50         60 
MPAMPGPLDA YRRKRDFSQT REPAGEGHAT GQRGDGALRY VIQKHDATRL HYDFRLELDG 

        70         80         90        100        110        120 
TLKSWAIPKG PSLDPADRRL AVHVEDHPLD YADFEGHIPE DQYGGGDVIV WDRGTWRPHG 

       130        140        150        160        170        180 
DAHAAYRAGK LKFDLDGEKL HGAWTLVRTR LPGSGRHPRE QWLLIKERDD QVRPSSAYDI 

       190        200        210        220        230        240 
TQALPASVIS GRDVGDGPPA QNAVPTAMAP EPSRRTVDPP AGAVAAPLPA TLEPQLATLV 

       250        260        270        280        290        300 
GTPPASGTWD YEAKFDGYRI LARIDGDSVQ LFSRNGRDWT ARLPRQARAL PALGLRSAWL 

       310        320        330        340        350        360 
DGEAVVVNEQ GVPDFQALQN AFETAHMERI RYVLFDLPYC NGVDLRGVPL RERRALLERI 

       370        380        390        400        410        420 
VEAAPGALDR EAIAYSARLD APPSQLLASA CGMSMEGIIG KRADAPYRSG RGPTWIKLKC 

       430        440        450        460        470        480 
GQRQAFVIGG YSAPKGSRSG FGALLLGVYA DDGALRYAGR VGTGFNQASL RALHAELRGL 

       490        500        510        520        530        540 
HTDRPPFADP PTGADARDVQ WVRPERVAEI AFAEWTREGI VRQAVFQGLR DDKPARSIVR 

       550        560        570        580        590        600 
ETAGTVGTAP RSTGHDVSAR PPAARPARTV RPGAERIAGV DITHPDRIIE KASGTTKADL 

       610        620        630        640        650        660 
ARYYASIADW LLPHLRNRPV ALLRAPDGID GEHFFQKHIG ALQISGITQL DPALDPGHAS 

       670        680        690        700        710        720 
LLTIDSVAAL IGAVQMGVVE FHTWNALADR IEQPDRIVFD IDPDPALPFA RVIEATQLTL 

       730        740        750        760        770        780 
ALLDELGLRT FLKTSGGRGL HVVVPLARRT PAGWEMLKAF AQAVTQHLAH TLPDRFAAKM 

       790        800        810        820        830        840 
GPQNRIGKTF VDYLRNNRGA STVAACSVRA RPGLPVSVPI AHDELAGLHS AAQWNLRTLP 

       850        860        870 
DRLAALQADP WAGYAGTRQS VTAGMRRRIG LD

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References

[1]"Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence."
Remenant B., Coupat-Goutaland B., Guidot A., Cellier G., Wicker E., Allen C., Fegan M., Pruvost O., Elbaz M., Calteau A., Salvignol G., Mornico D., Mangenot S., Barbe V., Medigue C., Prior P.
BMC Genomics 11:379-379(2010)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PSI07 EMBL CBJ52137.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FP885906 Genomic DNA. Translation: CBJ52137.1.
RefSeqYP_003753397.1. NC_014311.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBJ52137; CBJ52137; RPSI07_2772.
GeneID9409086.
KEGGrsl:RPSI07_2772.
PATRIC42541717. VBIRalSol167236_4428.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycRSOL859657:GJJ9-2818-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8NY76_RALSL
AccessionPrimary (citable) accession number: D8NY76
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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