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D8NY76

- D8NY76_RALSL

UniProt

D8NY76 - D8NY76_RALSL

Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPSI07_2772

Organism
Ralstonia solanacearum (Pseudomonas solanacearum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRSOL859657:GJJ9-2818-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    ORF Names:RPSI07_2772Imported
    OrganismiRalstonia solanacearum (Pseudomonas solanacearum)Imported
    Taxonomic identifieri305 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
    ProteomesiUP000006858: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8NY76-1 [UniParc]FASTAAdd to Basket

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    MPAMPGPLDA YRRKRDFSQT REPAGEGHAT GQRGDGALRY VIQKHDATRL    50
    HYDFRLELDG TLKSWAIPKG PSLDPADRRL AVHVEDHPLD YADFEGHIPE 100
    DQYGGGDVIV WDRGTWRPHG DAHAAYRAGK LKFDLDGEKL HGAWTLVRTR 150
    LPGSGRHPRE QWLLIKERDD QVRPSSAYDI TQALPASVIS GRDVGDGPPA 200
    QNAVPTAMAP EPSRRTVDPP AGAVAAPLPA TLEPQLATLV GTPPASGTWD 250
    YEAKFDGYRI LARIDGDSVQ LFSRNGRDWT ARLPRQARAL PALGLRSAWL 300
    DGEAVVVNEQ GVPDFQALQN AFETAHMERI RYVLFDLPYC NGVDLRGVPL 350
    RERRALLERI VEAAPGALDR EAIAYSARLD APPSQLLASA CGMSMEGIIG 400
    KRADAPYRSG RGPTWIKLKC GQRQAFVIGG YSAPKGSRSG FGALLLGVYA 450
    DDGALRYAGR VGTGFNQASL RALHAELRGL HTDRPPFADP PTGADARDVQ 500
    WVRPERVAEI AFAEWTREGI VRQAVFQGLR DDKPARSIVR ETAGTVGTAP 550
    RSTGHDVSAR PPAARPARTV RPGAERIAGV DITHPDRIIE KASGTTKADL 600
    ARYYASIADW LLPHLRNRPV ALLRAPDGID GEHFFQKHIG ALQISGITQL 650
    DPALDPGHAS LLTIDSVAAL IGAVQMGVVE FHTWNALADR IEQPDRIVFD 700
    IDPDPALPFA RVIEATQLTL ALLDELGLRT FLKTSGGRGL HVVVPLARRT 750
    PAGWEMLKAF AQAVTQHLAH TLPDRFAAKM GPQNRIGKTF VDYLRNNRGA 800
    STVAACSVRA RPGLPVSVPI AHDELAGLHS AAQWNLRTLP DRLAALQADP 850
    WAGYAGTRQS VTAGMRRRIG LD 872
    Length:872
    Mass (Da):94,899
    Last modified:October 5, 2010 - v1
    Checksum:iBFADFC9CD15A39A7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP885906 Genomic DNA. Translation: CBJ52137.1.

    Genome annotation databases

    EnsemblBacteriaiCBJ52137; CBJ52137; RPSI07_2772.
    PATRICi42541717. VBIRalSol167236_4428.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FP885906 Genomic DNA. Translation: CBJ52137.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBJ52137 ; CBJ52137 ; RPSI07_2772 .
    PATRICi 42541717. VBIRalSol167236_4428.

    Phylogenomic databases

    HOGENOMi HOG000222509.

    Enzyme and pathway databases

    BioCyci RSOL859657:GJJ9-2818-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence."
      Remenant B., Coupat-Goutaland B., Guidot A., Cellier G., Wicker E., Allen C., Fegan M., Pruvost O., Elbaz M., Calteau A., Salvignol G., Mornico D., Mangenot S., Barbe V., Medigue C., Prior P.
      BMC Genomics 11:379-379(2010)
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PSI07Imported.

    Entry informationi

    Entry nameiD8NY76_RALSL
    AccessioniPrimary (citable) accession number: D8NY76
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3