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D8NY76

- D8NY76_RALSL

UniProt

D8NY76 - D8NY76_RALSL

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPSI07_2772

Organism
Ralstonia solanacearum (Pseudomonas solanacearum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSOL859657:GJJ9-2818-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:RPSI07_2772Imported
OrganismiRalstonia solanacearum (Pseudomonas solanacearum)Imported
Taxonomic identifieri305 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
ProteomesiUP000006858: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8NY76-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPAMPGPLDA YRRKRDFSQT REPAGEGHAT GQRGDGALRY VIQKHDATRL
60 70 80 90 100
HYDFRLELDG TLKSWAIPKG PSLDPADRRL AVHVEDHPLD YADFEGHIPE
110 120 130 140 150
DQYGGGDVIV WDRGTWRPHG DAHAAYRAGK LKFDLDGEKL HGAWTLVRTR
160 170 180 190 200
LPGSGRHPRE QWLLIKERDD QVRPSSAYDI TQALPASVIS GRDVGDGPPA
210 220 230 240 250
QNAVPTAMAP EPSRRTVDPP AGAVAAPLPA TLEPQLATLV GTPPASGTWD
260 270 280 290 300
YEAKFDGYRI LARIDGDSVQ LFSRNGRDWT ARLPRQARAL PALGLRSAWL
310 320 330 340 350
DGEAVVVNEQ GVPDFQALQN AFETAHMERI RYVLFDLPYC NGVDLRGVPL
360 370 380 390 400
RERRALLERI VEAAPGALDR EAIAYSARLD APPSQLLASA CGMSMEGIIG
410 420 430 440 450
KRADAPYRSG RGPTWIKLKC GQRQAFVIGG YSAPKGSRSG FGALLLGVYA
460 470 480 490 500
DDGALRYAGR VGTGFNQASL RALHAELRGL HTDRPPFADP PTGADARDVQ
510 520 530 540 550
WVRPERVAEI AFAEWTREGI VRQAVFQGLR DDKPARSIVR ETAGTVGTAP
560 570 580 590 600
RSTGHDVSAR PPAARPARTV RPGAERIAGV DITHPDRIIE KASGTTKADL
610 620 630 640 650
ARYYASIADW LLPHLRNRPV ALLRAPDGID GEHFFQKHIG ALQISGITQL
660 670 680 690 700
DPALDPGHAS LLTIDSVAAL IGAVQMGVVE FHTWNALADR IEQPDRIVFD
710 720 730 740 750
IDPDPALPFA RVIEATQLTL ALLDELGLRT FLKTSGGRGL HVVVPLARRT
760 770 780 790 800
PAGWEMLKAF AQAVTQHLAH TLPDRFAAKM GPQNRIGKTF VDYLRNNRGA
810 820 830 840 850
STVAACSVRA RPGLPVSVPI AHDELAGLHS AAQWNLRTLP DRLAALQADP
860 870
WAGYAGTRQS VTAGMRRRIG LD
Length:872
Mass (Da):94,899
Last modified:October 5, 2010 - v1
Checksum:iBFADFC9CD15A39A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP885906 Genomic DNA. Translation: CBJ52137.1.

Genome annotation databases

EnsemblBacteriaiCBJ52137; CBJ52137; RPSI07_2772.
PATRICi42541717. VBIRalSol167236_4428.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP885906 Genomic DNA. Translation: CBJ52137.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBJ52137 ; CBJ52137 ; RPSI07_2772 .
PATRICi 42541717. VBIRalSol167236_4428.

Phylogenomic databases

HOGENOMi HOG000222509.

Enzyme and pathway databases

BioCyci RSOL859657:GJJ9-2818-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence."
    Remenant B., Coupat-Goutaland B., Guidot A., Cellier G., Wicker E., Allen C., Fegan M., Pruvost O., Elbaz M., Calteau A., Salvignol G., Mornico D., Mangenot S., Barbe V., Medigue C., Prior P.
    BMC Genomics 11:379-379(2010)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PSI07Imported.

Entry informationi

Entry nameiD8NY76_RALSL
AccessioniPrimary (citable) accession number: D8NY76
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 1, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3