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D8JYX4 (D8JYX4_HYPDA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Radical SAM domain protein EMBL ADJ23576.1
Gene names
Ordered Locus Names:Hden_1773
OrganismHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) [Complete proteome] [HAMAP]
Taxonomic identifier582899 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Hyphomicrobiaceae › Hyphomicrobium ›

Protein attributes

Sequence length342 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcofactor metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

iron-sulfur cluster binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8JYX4 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 6FB646A83E507316

FASTA34237,782
        10         20         30         40         50         60 
MDFSELIAQV TRPDPPKELA LQLLQRSREP ALALQLFAAA SKIRDETMGK TLWWSAGISS 

        70         80         90        100        110        120 
MMPCRVEPLC TYCTYFTVKS FPLDELVASV KAIEDLGIRH LHLSGGTDLA GYDNELCEAV 

       130        140        150        160        170        180 
NAIRDVSSIE IEINLGPSLT RNGVRRLKQL GVASITSSLE TFNPEIFAKA KPGDSLDARK 

       190        200        210        220        230        240 
ALIEMCQDEG MPVRSMILVG LGESEADRID HLYWLLQFPR LYHLRFSRFM PYRGTSWEDH 

       250        260        270        280        290        300 
PRCSPWEVAR LVAVARLLMP HVDLGLAAGN SPDDIPLWYA AGGGNQVLGA SVSMRQGRVK 

       310        320        330        340 
AQPGETVIPV TDRVSLVSRM GHIEQFVRGL GRDIGSAAPQ LR

« Hide

References

[1]"Genome sequences of eight morphologically diverse alphaproteobacteria."
US DOE Joint Genome Institute
Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002083 Genomic DNA. Translation: ADJ23576.1.
RefSeqYP_003755897.1. NC_014313.1.

3D structure databases

ProteinModelPortalD8JYX4.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ23576; ADJ23576; Hden_1773.
GeneID9387666.
KEGGhdn:Hden_1773.
PATRIC42372179. VBIHypDen91677_1824.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000086694.
KOK01012.
OMADDIPLWY.

Enzyme and pathway databases

BioCycHDEN582899:GIWL-1793-MONOMER.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR010722. Biotin/thiamin_synth-assoc.
IPR006638. Elp3/MiaB/NifB.
IPR007197. rSAM.
[Graphical view]
PfamPF06968. BATS. 1 hit.
PF04055. Radical_SAM. 1 hit.
[Graphical view]
SMARTSM00729. Elp3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8JYX4_HYPDA
AccessionPrimary (citable) accession number: D8JYX4
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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