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Protein
Submitted name:

Radical SAM domain protein

Gene

Hden_1773

Organism
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciHDEN582899:GIWL-1793-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Radical SAM domain proteinImported
Gene namesi
Ordered Locus Names:Hden_1773Imported
OrganismiHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)Imported
Taxonomic identifieri582899 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000002033 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi582899.Hden_1773.

Structurei

3D structure databases

ProteinModelPortaliD8JYX4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000086694.
KOiK01012.
OMAiDDIPLWY.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR010722. BATS_dom.
IPR006638. Elp3/MiaB/NifB.
IPR007197. rSAM.
[Graphical view]
PfamiPF06968. BATS. 1 hit.
PF04055. Radical_SAM. 1 hit.
[Graphical view]
SMARTiSM00729. Elp3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8JYX4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFSELIAQV TRPDPPKELA LQLLQRSREP ALALQLFAAA SKIRDETMGK
60 70 80 90 100
TLWWSAGISS MMPCRVEPLC TYCTYFTVKS FPLDELVASV KAIEDLGIRH
110 120 130 140 150
LHLSGGTDLA GYDNELCEAV NAIRDVSSIE IEINLGPSLT RNGVRRLKQL
160 170 180 190 200
GVASITSSLE TFNPEIFAKA KPGDSLDARK ALIEMCQDEG MPVRSMILVG
210 220 230 240 250
LGESEADRID HLYWLLQFPR LYHLRFSRFM PYRGTSWEDH PRCSPWEVAR
260 270 280 290 300
LVAVARLLMP HVDLGLAAGN SPDDIPLWYA AGGGNQVLGA SVSMRQGRVK
310 320 330 340
AQPGETVIPV TDRVSLVSRM GHIEQFVRGL GRDIGSAAPQ LR
Length:342
Mass (Da):37,782
Last modified:October 5, 2010 - v1
Checksum:i6FB646A83E507316
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002083 Genomic DNA. Translation: ADJ23576.1.
RefSeqiWP_013215735.1. NC_014313.1.

Genome annotation databases

EnsemblBacteriaiADJ23576; ADJ23576; Hden_1773.
KEGGihdn:Hden_1773.
PATRICi42372179. VBIHypDen91677_1824.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002083 Genomic DNA. Translation: ADJ23576.1.
RefSeqiWP_013215735.1. NC_014313.1.

3D structure databases

ProteinModelPortaliD8JYX4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi582899.Hden_1773.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADJ23576; ADJ23576; Hden_1773.
KEGGihdn:Hden_1773.
PATRICi42372179. VBIHypDen91677_1824.

Phylogenomic databases

HOGENOMiHOG000086694.
KOiK01012.
OMAiDDIPLWY.

Enzyme and pathway databases

BioCyciHDEN582899:GIWL-1793-MONOMER.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR010722. BATS_dom.
IPR006638. Elp3/MiaB/NifB.
IPR007197. rSAM.
[Graphical view]
PfamiPF06968. BATS. 1 hit.
PF04055. Radical_SAM. 1 hit.
[Graphical view]
SMARTiSM00729. Elp3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415Imported.

Entry informationi

Entry nameiD8JYX4_HYPDA
AccessioniPrimary (citable) accession number: D8JYX4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: July 22, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.