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D8JYX4

- D8JYX4_HYPDA

UniProt

D8JYX4 - D8JYX4_HYPDA

Protein
Submitted name:

Radical SAM domain protein

Gene

Hden_1773

Organism
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. catalytic activity Source: InterPro
    2. iron-sulfur cluster binding Source: InterPro

    Enzyme and pathway databases

    BioCyciHDEN582899:GIWL-1793-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Radical SAM domain proteinImported
    Gene namesi
    Ordered Locus Names:Hden_1773Imported
    OrganismiHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)Imported
    Taxonomic identifieri582899 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
    ProteomesiUP000002033: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD8JYX4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000086694.
    KOiK01012.
    OMAiDDIPLWY.

    Family and domain databases

    Gene3Di3.20.20.70. 1 hit.
    InterProiIPR013785. Aldolase_TIM.
    IPR010722. BATS_dom.
    IPR006638. Elp3/MiaB/NifB.
    IPR007197. rSAM.
    [Graphical view]
    PfamiPF06968. BATS. 1 hit.
    PF04055. Radical_SAM. 1 hit.
    [Graphical view]
    SMARTiSM00729. Elp3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8JYX4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDFSELIAQV TRPDPPKELA LQLLQRSREP ALALQLFAAA SKIRDETMGK    50
    TLWWSAGISS MMPCRVEPLC TYCTYFTVKS FPLDELVASV KAIEDLGIRH 100
    LHLSGGTDLA GYDNELCEAV NAIRDVSSIE IEINLGPSLT RNGVRRLKQL 150
    GVASITSSLE TFNPEIFAKA KPGDSLDARK ALIEMCQDEG MPVRSMILVG 200
    LGESEADRID HLYWLLQFPR LYHLRFSRFM PYRGTSWEDH PRCSPWEVAR 250
    LVAVARLLMP HVDLGLAAGN SPDDIPLWYA AGGGNQVLGA SVSMRQGRVK 300
    AQPGETVIPV TDRVSLVSRM GHIEQFVRGL GRDIGSAAPQ LR 342
    Length:342
    Mass (Da):37,782
    Last modified:October 5, 2010 - v1
    Checksum:i6FB646A83E507316
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002083 Genomic DNA. Translation: ADJ23576.1.
    RefSeqiYP_003755897.1. NC_014313.1.

    Genome annotation databases

    EnsemblBacteriaiADJ23576; ADJ23576; Hden_1773.
    GeneIDi9387666.
    KEGGihdn:Hden_1773.
    PATRICi42372179. VBIHypDen91677_1824.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002083 Genomic DNA. Translation: ADJ23576.1 .
    RefSeqi YP_003755897.1. NC_014313.1.

    3D structure databases

    ProteinModelPortali D8JYX4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ23576 ; ADJ23576 ; Hden_1773 .
    GeneIDi 9387666.
    KEGGi hdn:Hden_1773.
    PATRICi 42372179. VBIHypDen91677_1824.

    Phylogenomic databases

    HOGENOMi HOG000086694.
    KOi K01012.
    OMAi DDIPLWY.

    Enzyme and pathway databases

    BioCyci HDEN582899:GIWL-1793-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.70. 1 hit.
    InterProi IPR013785. Aldolase_TIM.
    IPR010722. BATS_dom.
    IPR006638. Elp3/MiaB/NifB.
    IPR007197. rSAM.
    [Graphical view ]
    Pfami PF06968. BATS. 1 hit.
    PF04055. Radical_SAM. 1 hit.
    [Graphical view ]
    SMARTi SM00729. Elp3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415Imported.

    Entry informationi

    Entry nameiD8JYX4_HYPDA
    AccessioniPrimary (citable) accession number: D8JYX4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3