D8JW44 (D8JW44_HYPDA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent helicase HrpB EMBL ADJ24923.1

Gene names

Ordered Locus Names:

Hden_3128

Organism

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) [Complete proteome] [HAMAP]

Taxonomic identifier

582899 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Hyphomicrobiaceae › Hyphomicrobium › Hyphomicrobium denitrificans

Protein attributes

Sequence length	821 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Ligand	ATP-binding Nucleotide-binding
Molecular function	Helicase RuleBase RU000452 EMBL ADJ24923.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent helicase activity Inferred from electronic annotation. Source: InterPro nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8JW44 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 8740C456BE6A54E7	FASTA	821	88,328
	10 20 30 40 50 60 MAGPIVSAPL PIDAVLGDVR NALRTHGTGV LVAAPGAGKT TRVPLALLDE PWRDGGKIVV 70 80 90 100 110 120 LEPRRIAARA AAERLAATLG TRLGDRVGLR ARLASKTSAN VAIEVVTEGV FTRMILDDPE 130 140 150 160 170 180 LSGVAAVLFD EFHERSLDAD LGLALALDTR GALRPDLKIL VMSATLEASR VAKLLGDAPV 190 200 210 220 230 240 IASDGRTFPI ETRHIGRRAQ RIEDDVVDAV RRALERDTGS ILVFLPGQGE ITRVAERLRA 250 260 270 280 290 300 LDLPETIDIA PLYGALDPAT QDRAISPANA GHRKIVLATS IAETSITIEG VRVVIDSGLA 310 320 330 340 350 360 RVPRFEPDVG VTRLETVRVS RASADQRRGR AGRTEPGICY RLWDEPETQG LVPFAEPEIR 370 380 390 400 410 420 VADLSSLLLD CAEWGTNDPR SLAWLDPPSE GALSAARSGL QAIGALDAEG HITQEGRRLR 430 440 450 460 470 480 ALPLPPRLAR MLLKAGERGA AEDAAELAAV LVERGIGGND LDIATRLENF RRDRSRRSQD 490 500 510 520 530 540 MRALARQWAR AATTSAKGDT LSPAELLALA YPERIAKNRG KRGSFLLANG RAGLLDTAHP 550 560 570 580 590 600 LAGAPYLVVA ELQGRAAATR IMLATATDEA EVSVFAGDRI ASDDALTFDR DSRSVKARSV 610 620 630 640 650 660 RRLGAIELRS ESRPVRPDED SAPVLANGVA QLGIGNLPWS KAQLQLRNRV GFLRANDESW 670 680 690 700 710 720 PDLSDAALAA AVGEWLQPFL SGKTRVSEID ASTLEQALTS VLPWPIRQRL DAEAPTHFEA 730 740 750 760 770 780 PTGNSHALDY ESAAAPALHI RVQELFGLKE HPAIARGRLP LTLYLLSPAH RPIQITRDLP 790 800 810 820 GFWAGSWAAV KADMRGQYPK HVWPDDPANA TPTSRAKPRG K

References

[1]

"Genome sequences of eight morphologically diverse alphaproteobacteria." US DOE Joint Genome Institute Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V. J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002083 Genomic DNA. Translation: ADJ24923.1.
RefSeq	YP_003757244.1. NC_014313.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ24923; ADJ24923; Hden_3128.
GeneID	9389042.
KEGG	hdn:Hden_3128.
PATRIC	42375051. VBIHypDen91677_3241.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000244610.
KO	K03579.
OMA	GILTRMI.
Enzyme and pathway databases
BioCyc	HDEN582899:GIWL-3169-MONOMER.
Family and domain databases
InterPro	IPR011545. DNA/RNA_helicase_DEAD/DEAH_N. IPR007502. Helicase-assoc_dom. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. IPR010225. RNA_helicase_ATP-dep_DEAH_HrpB. IPR013689. RNA_helicase_ATP-dep_HrpB_C. [Graphical view]
Pfam	PF00270. DEAD. 1 hit. PF04408. HA2. 1 hit. PF00271. Helicase_C. 1 hit. PF08482. HrpB_C. 1 hit. [Graphical view]
PIRSF	PIRSF005496. ATP_hel_hrpB. 1 hit.
SMART	SM00487. DEXDc. 1 hit. SM00847. HA2. 1 hit. SM00490. HELICc. 1 hit. [Graphical view]
TIGRFAMs	TIGR01970. DEAH_box_HrpB. 1 hit.
PROSITE	PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8JW44_HYPDA

Accession

Primary (citable) accession number: D8JW44

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)