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D8JV68 (D8JV68_HYPDA) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Hden_1070 EMBL ADJ22884.1
OrganismHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) [Complete proteome] [HAMAP] EMBL ADJ22884.1
Taxonomic identifier582899 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium

Protein attributes

Sequence length562 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
D8JV68 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: D2AC0EA6014CC288

FASTA56262,167
        10         20         30         40         50         60 
MASKQLSEYR AKRDFTKTAE PSGAKSVRPA KHLRFVIQKH DATRLHYDLR LELDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP KVKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGF WAPLGDETPE 

       130        140        150        160        170        180 
QQLRKGDLKF VLVGDKLEGS WVLVRIKNDR AGNKRTNWLL IKHRDQIAKP GDDDSILEKD 

       190        200        210        220        230        240 
RSVASGRSMT DIAAGRGKGP EPFISKRRHA AKPDAIWNSN RADGQAKEDE KKPVPLRRVL 

       250        260        270        280        290        300 
VKKTTKADNR PASQRSAKSN DGGPNTVCGI TISNPDKKLW PANTGAAVSK LDLAHYLEAV 

       310        320        330        340        350        360 
GPWMLEHIKG RPCSVIRAPD GIDGETFFQR HAMRGMSSEI DLVRISGDRE PYIEVNSVEA 

       370        380        390        400        410        420 
LVALGQIAAL EFHPWNCEPL EPDVPGRLVF DLDPAPDVPF DRVVDAANEL RERLQAIGLV 

       430        440        450        460        470        480 
PFCKTTGGKG LHVVTPLKPR RGDGIGWNEA KTFAGALCQQ MAADDPKSYL IKMTKKLRTG 

       490        500        510        520        530        540 
RIFLDYLRND RMATAVAPLS PRARPGATVS MPLTWSQVRK GLDPARFTVH TVPDLLAKSK 

       550        560 
AWNDYCDSCR PLGAAIKSLL GK 

« Hide

References

[1]"Genome sequences of eight morphologically diverse alphaproteobacteria."
US DOE Joint Genome Institute
Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002083 Genomic DNA. Translation: ADJ22884.1.
RefSeqYP_003755205.1. NC_014313.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ22884; ADJ22884; Hden_1070.
GeneID9386958.
KEGGhdn:Hden_1070.
PATRIC42370753. VBIHypDen91677_1117.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMAFDDTRAW.

Enzyme and pathway databases

BioCycHDEN582899:GIWL-1085-MONOMER.

Family and domain databases

InterProIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8JV68_HYPDA
AccessionPrimary (citable) accession number: D8JV68
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 14, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)