Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Hden_1070

Organism
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciHDEN582899:GIWL-1085-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Hden_1070Imported
OrganismiHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)Imported
Taxonomic identifieri582899 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000002033: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

D8JV68-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASKQLSEYR AKRDFTKTAE PSGAKSVRPA KHLRFVIQKH DATRLHYDLR
60 70 80 90 100
LELDGVFKSW AVTKGPSLDP KVKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGF WAPLGDETPE QQLRKGDLKF VLVGDKLEGS WVLVRIKNDR
160 170 180 190 200
AGNKRTNWLL IKHRDQIAKP GDDDSILEKD RSVASGRSMT DIAAGRGKGP
210 220 230 240 250
EPFISKRRHA AKPDAIWNSN RADGQAKEDE KKPVPLRRVL VKKTTKADNR
260 270 280 290 300
PASQRSAKSN DGGPNTVCGI TISNPDKKLW PANTGAAVSK LDLAHYLEAV
310 320 330 340 350
GPWMLEHIKG RPCSVIRAPD GIDGETFFQR HAMRGMSSEI DLVRISGDRE
360 370 380 390 400
PYIEVNSVEA LVALGQIAAL EFHPWNCEPL EPDVPGRLVF DLDPAPDVPF
410 420 430 440 450
DRVVDAANEL RERLQAIGLV PFCKTTGGKG LHVVTPLKPR RGDGIGWNEA
460 470 480 490 500
KTFAGALCQQ MAADDPKSYL IKMTKKLRTG RIFLDYLRND RMATAVAPLS
510 520 530 540 550
PRARPGATVS MPLTWSQVRK GLDPARFTVH TVPDLLAKSK AWNDYCDSCR
560
PLGAAIKSLL GK
Length:562
Mass (Da):62,167
Last modified:October 5, 2010 - v1
Checksum:iD2AC0EA6014CC288
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002083 Genomic DNA. Translation: ADJ22884.1.
RefSeqiWP_013215099.1. NC_014313.1.
YP_003755205.1. NC_014313.1.

Genome annotation databases

EnsemblBacteriaiADJ22884; ADJ22884; Hden_1070.
GeneIDi9386958.
KEGGihdn:Hden_1070.
PATRICi42370753. VBIHypDen91677_1117.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002083 Genomic DNA. Translation: ADJ22884.1.
RefSeqiWP_013215099.1. NC_014313.1.
YP_003755205.1. NC_014313.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADJ22884; ADJ22884; Hden_1070.
GeneIDi9386958.
KEGGihdn:Hden_1070.
PATRICi42370753. VBIHypDen91677_1117.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Enzyme and pathway databases

BioCyciHDEN582899:GIWL-1085-MONOMER.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415Imported.

Entry informationi

Entry nameiD8JV68_HYPDA
AccessioniPrimary (citable) accession number: D8JV68
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 7, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.