D8JTA1 (D8JTA1_HYPDA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADJ24419.1

Gene names

Ordered Locus Names:

Hden_2623

Organism

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) [Complete proteome] [HAMAP]

Taxonomic identifier

582899 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Hyphomicrobiaceae › Hyphomicrobium › Hyphomicrobium denitrificans

Protein attributes

Sequence length	659 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADJ24419.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8JTA1 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 222AB960E19F8672	FASTA	659	74,032
	10 20 30 40 50 60 MRAFARLLDC LVYTQSRNRK TALLARYFRS TPDPDRGWAL AALTDGIPIR LPLRRMVGDL 70 80 90 100 110 120 TGRFIDPILY QLSRDYVGDT AETVALLWPD EPVDLMRVET TSSDPSPQGV EREEESAVPS 130 140 150 160 170 180 TTRGRARREK LDDKSRQLSL DFTPTPDPSP RGGGENETAP LARKEHKQER RAIAVNVDDR 190 200 210 220 230 240 RSQDDTRSAS QPRSEITDRA RSDVGHNSGE PAYLSLGNII GEMANGTAAE RTVRLGQFLN 250 260 270 280 290 300 ALDASGRWAL LKLLGGAPRV GVSARLARTA LAEAYGRDVS EIEEIWHALE PPYLDLFAWL 310 320 330 340 350 360 DGKAERPDPG SKPVFRPVML AHPVEEEDWP KLAPEDFIAE WKWDGIRVQI SARGGDVRMF 370 380 390 400 410 420 SRQGDDISGT FPEIRSAFEG HDCVVDGELL IMRDGEIAPF NDLQQRLNRK VVTAKMMTAF 430 440 450 460 470 480 PPHVRLYDLL FDGPEDLRAL PFSERRARLE TWHAREHPRL TDVSPLVGFT TFDDLNVLWS 490 500 510 520 530 540 SSRAEGIEGL MLKRRDSAYQ AGRIKGQWWK WKRAALTLDC VLMYAQRGSG KRSSYYSDYT 550 560 570 580 590 600 FGVWQEDTGG ERQLVPVGKA YSGFTDEELL LLDRWIRNNT VETFGPVRAV APGIVFEVAF 610 620 630 640 650 DAVHVSTRHK SGVAMRFPRI HRIRWDKPAA EADTLETVLR LVSGGAEVTA EGSADIEER

References

[1]

"Genome sequences of eight morphologically diverse alphaproteobacteria." US DOE Joint Genome Institute Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V. J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002083 Genomic DNA. Translation: ADJ24419.1.
RefSeq	YP_003756740.1. NC_014313.1.
3D structure databases
ProteinModelPortal	D8JTA1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ24419; ADJ24419; Hden_2623.
GeneID	9388531.
KEGG	hdn:Hden_2623.
PATRIC	42374003. VBIHypDen91677_2722.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
OMA	KHAKPAL.
Enzyme and pathway databases
BioCyc	HDEN582899:GIWL-2658-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8JTA1_HYPDA

Accession

Primary (citable) accession number: D8JTA1

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)