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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Hden_2623

Organism
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciHDEN582899:G1GLW-2602-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Hden_2623Imported
OrganismiHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)Imported
Taxonomic identifieri582899 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
Proteomesi
  • UP000002033 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi582899.Hden_2623

Structurei

3D structure databases

ProteinModelPortaliD8JTA1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini426 – 545DNA_LIGASE_A3InterPro annotationAdd BLAST120

Phylogenomic databases

eggNOGiENOG4107QIM Bacteria
COG1793 LUCA
HOGENOMiHOG000036007
KOiK10747
OMAiWLFEESY
OrthoDBiPOG091H09SJ

Family and domain databases

InterProiView protein in InterPro
IPR026333 ATP_dep_DNA_lig_pp_1105_fam
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR04120 DNA_lig_bact, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

D8JTA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAFARLLDC LVYTQSRNRK TALLARYFRS TPDPDRGWAL AALTDGIPIR
60 70 80 90 100
LPLRRMVGDL TGRFIDPILY QLSRDYVGDT AETVALLWPD EPVDLMRVET
110 120 130 140 150
TSSDPSPQGV EREEESAVPS TTRGRARREK LDDKSRQLSL DFTPTPDPSP
160 170 180 190 200
RGGGENETAP LARKEHKQER RAIAVNVDDR RSQDDTRSAS QPRSEITDRA
210 220 230 240 250
RSDVGHNSGE PAYLSLGNII GEMANGTAAE RTVRLGQFLN ALDASGRWAL
260 270 280 290 300
LKLLGGAPRV GVSARLARTA LAEAYGRDVS EIEEIWHALE PPYLDLFAWL
310 320 330 340 350
DGKAERPDPG SKPVFRPVML AHPVEEEDWP KLAPEDFIAE WKWDGIRVQI
360 370 380 390 400
SARGGDVRMF SRQGDDISGT FPEIRSAFEG HDCVVDGELL IMRDGEIAPF
410 420 430 440 450
NDLQQRLNRK VVTAKMMTAF PPHVRLYDLL FDGPEDLRAL PFSERRARLE
460 470 480 490 500
TWHAREHPRL TDVSPLVGFT TFDDLNVLWS SSRAEGIEGL MLKRRDSAYQ
510 520 530 540 550
AGRIKGQWWK WKRAALTLDC VLMYAQRGSG KRSSYYSDYT FGVWQEDTGG
560 570 580 590 600
ERQLVPVGKA YSGFTDEELL LLDRWIRNNT VETFGPVRAV APGIVFEVAF
610 620 630 640 650
DAVHVSTRHK SGVAMRFPRI HRIRWDKPAA EADTLETVLR LVSGGAEVTA

EGSADIEER
Length:659
Mass (Da):74,032
Last modified:October 5, 2010 - v1
Checksum:i222AB960E19F8672
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002083 Genomic DNA Translation: ADJ24419.1
RefSeqiWP_013216578.1, NC_014313.1

Genome annotation databases

EnsemblBacteriaiADJ24419; ADJ24419; Hden_2623
KEGGihdn:Hden_2623

Similar proteinsi

Entry informationi

Entry nameiD8JTA1_HYPDA
AccessioniPrimary (citable) accession number: D8JTA1
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health