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D8JTA1

- D8JTA1_HYPDA

UniProt

D8JTA1 - D8JTA1_HYPDA

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Hden_2623

Organism
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciHDEN582899:GIWL-2658-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Hden_2623Imported
    OrganismiHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)Imported
    Taxonomic identifieri582899 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
    ProteomesiUP000002033: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD8JTA1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiLETWHAR.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8JTA1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRAFARLLDC LVYTQSRNRK TALLARYFRS TPDPDRGWAL AALTDGIPIR    50
    LPLRRMVGDL TGRFIDPILY QLSRDYVGDT AETVALLWPD EPVDLMRVET 100
    TSSDPSPQGV EREEESAVPS TTRGRARREK LDDKSRQLSL DFTPTPDPSP 150
    RGGGENETAP LARKEHKQER RAIAVNVDDR RSQDDTRSAS QPRSEITDRA 200
    RSDVGHNSGE PAYLSLGNII GEMANGTAAE RTVRLGQFLN ALDASGRWAL 250
    LKLLGGAPRV GVSARLARTA LAEAYGRDVS EIEEIWHALE PPYLDLFAWL 300
    DGKAERPDPG SKPVFRPVML AHPVEEEDWP KLAPEDFIAE WKWDGIRVQI 350
    SARGGDVRMF SRQGDDISGT FPEIRSAFEG HDCVVDGELL IMRDGEIAPF 400
    NDLQQRLNRK VVTAKMMTAF PPHVRLYDLL FDGPEDLRAL PFSERRARLE 450
    TWHAREHPRL TDVSPLVGFT TFDDLNVLWS SSRAEGIEGL MLKRRDSAYQ 500
    AGRIKGQWWK WKRAALTLDC VLMYAQRGSG KRSSYYSDYT FGVWQEDTGG 550
    ERQLVPVGKA YSGFTDEELL LLDRWIRNNT VETFGPVRAV APGIVFEVAF 600
    DAVHVSTRHK SGVAMRFPRI HRIRWDKPAA EADTLETVLR LVSGGAEVTA 650
    EGSADIEER 659
    Length:659
    Mass (Da):74,032
    Last modified:October 5, 2010 - v1
    Checksum:i222AB960E19F8672
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002083 Genomic DNA. Translation: ADJ24419.1.
    RefSeqiYP_003756740.1. NC_014313.1.

    Genome annotation databases

    EnsemblBacteriaiADJ24419; ADJ24419; Hden_2623.
    GeneIDi9388531.
    KEGGihdn:Hden_2623.
    PATRICi42374003. VBIHypDen91677_2722.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002083 Genomic DNA. Translation: ADJ24419.1 .
    RefSeqi YP_003756740.1. NC_014313.1.

    3D structure databases

    ProteinModelPortali D8JTA1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ24419 ; ADJ24419 ; Hden_2623 .
    GeneIDi 9388531.
    KEGGi hdn:Hden_2623.
    PATRICi 42374003. VBIHypDen91677_2722.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi LETWHAR.

    Enzyme and pathway databases

    BioCyci HDEN582899:GIWL-2658-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415Imported.

    Entry informationi

    Entry nameiD8JTA1_HYPDA
    AccessioniPrimary (citable) accession number: D8JTA1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3