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D8JTA1

- D8JTA1_HYPDA

UniProt

D8JTA1 - D8JTA1_HYPDA

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Hden_2623

Organism
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHDEN582899:GIWL-2658-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Hden_2623Imported
OrganismiHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)Imported
Taxonomic identifieri582899 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000002033: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8JTA1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiLETWHAR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8JTA1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRAFARLLDC LVYTQSRNRK TALLARYFRS TPDPDRGWAL AALTDGIPIR
60 70 80 90 100
LPLRRMVGDL TGRFIDPILY QLSRDYVGDT AETVALLWPD EPVDLMRVET
110 120 130 140 150
TSSDPSPQGV EREEESAVPS TTRGRARREK LDDKSRQLSL DFTPTPDPSP
160 170 180 190 200
RGGGENETAP LARKEHKQER RAIAVNVDDR RSQDDTRSAS QPRSEITDRA
210 220 230 240 250
RSDVGHNSGE PAYLSLGNII GEMANGTAAE RTVRLGQFLN ALDASGRWAL
260 270 280 290 300
LKLLGGAPRV GVSARLARTA LAEAYGRDVS EIEEIWHALE PPYLDLFAWL
310 320 330 340 350
DGKAERPDPG SKPVFRPVML AHPVEEEDWP KLAPEDFIAE WKWDGIRVQI
360 370 380 390 400
SARGGDVRMF SRQGDDISGT FPEIRSAFEG HDCVVDGELL IMRDGEIAPF
410 420 430 440 450
NDLQQRLNRK VVTAKMMTAF PPHVRLYDLL FDGPEDLRAL PFSERRARLE
460 470 480 490 500
TWHAREHPRL TDVSPLVGFT TFDDLNVLWS SSRAEGIEGL MLKRRDSAYQ
510 520 530 540 550
AGRIKGQWWK WKRAALTLDC VLMYAQRGSG KRSSYYSDYT FGVWQEDTGG
560 570 580 590 600
ERQLVPVGKA YSGFTDEELL LLDRWIRNNT VETFGPVRAV APGIVFEVAF
610 620 630 640 650
DAVHVSTRHK SGVAMRFPRI HRIRWDKPAA EADTLETVLR LVSGGAEVTA

EGSADIEER
Length:659
Mass (Da):74,032
Last modified:October 5, 2010 - v1
Checksum:i222AB960E19F8672
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002083 Genomic DNA. Translation: ADJ24419.1.
RefSeqiYP_003756740.1. NC_014313.1.

Genome annotation databases

EnsemblBacteriaiADJ24419; ADJ24419; Hden_2623.
GeneIDi9388531.
KEGGihdn:Hden_2623.
PATRICi42374003. VBIHypDen91677_2722.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002083 Genomic DNA. Translation: ADJ24419.1 .
RefSeqi YP_003756740.1. NC_014313.1.

3D structure databases

ProteinModelPortali D8JTA1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ24419 ; ADJ24419 ; Hden_2623 .
GeneIDi 9388531.
KEGGi hdn:Hden_2623.
PATRICi 42374003. VBIHypDen91677_2722.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.
OMAi LETWHAR.

Enzyme and pathway databases

BioCyci HDEN582899:GIWL-2658-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415Imported.

Entry informationi

Entry nameiD8JTA1_HYPDA
AccessioniPrimary (citable) accession number: D8JTA1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 1, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3