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D8JTA1 (D8JTA1_HYPDA) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length659 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D8JTA1 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 222AB960E19F8672

FASTA65974,032
        10         20         30         40         50         60 
MRAFARLLDC LVYTQSRNRK TALLARYFRS TPDPDRGWAL AALTDGIPIR LPLRRMVGDL 

        70         80         90        100        110        120 
TGRFIDPILY QLSRDYVGDT AETVALLWPD EPVDLMRVET TSSDPSPQGV EREEESAVPS 

       130        140        150        160        170        180 
TTRGRARREK LDDKSRQLSL DFTPTPDPSP RGGGENETAP LARKEHKQER RAIAVNVDDR 

       190        200        210        220        230        240 
RSQDDTRSAS QPRSEITDRA RSDVGHNSGE PAYLSLGNII GEMANGTAAE RTVRLGQFLN 

       250        260        270        280        290        300 
ALDASGRWAL LKLLGGAPRV GVSARLARTA LAEAYGRDVS EIEEIWHALE PPYLDLFAWL 

       310        320        330        340        350        360 
DGKAERPDPG SKPVFRPVML AHPVEEEDWP KLAPEDFIAE WKWDGIRVQI SARGGDVRMF 

       370        380        390        400        410        420 
SRQGDDISGT FPEIRSAFEG HDCVVDGELL IMRDGEIAPF NDLQQRLNRK VVTAKMMTAF 

       430        440        450        460        470        480 
PPHVRLYDLL FDGPEDLRAL PFSERRARLE TWHAREHPRL TDVSPLVGFT TFDDLNVLWS 

       490        500        510        520        530        540 
SSRAEGIEGL MLKRRDSAYQ AGRIKGQWWK WKRAALTLDC VLMYAQRGSG KRSSYYSDYT 

       550        560        570        580        590        600 
FGVWQEDTGG ERQLVPVGKA YSGFTDEELL LLDRWIRNNT VETFGPVRAV APGIVFEVAF 

       610        620        630        640        650 
DAVHVSTRHK SGVAMRFPRI HRIRWDKPAA EADTLETVLR LVSGGAEVTA EGSADIEER 

« Hide

References

[1]"Genome sequences of eight morphologically diverse alphaproteobacteria."
US DOE Joint Genome Institute
Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002083 Genomic DNA. Translation: ADJ24419.1.
RefSeqYP_003756740.1. NC_014313.1.

3D structure databases

ProteinModelPortalD8JTA1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ24419; ADJ24419; Hden_2623.
GeneID9388531.
KEGGhdn:Hden_2623.
PATRIC42374003. VBIHypDen91677_2722.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.
OMAKHAKPAL.

Enzyme and pathway databases

BioCycHDEN582899:GIWL-2658-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8JTA1_HYPDA
AccessionPrimary (citable) accession number: D8JTA1
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)