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D8JQY1 (D8JQY1_HYPDA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Ribosomal protein S12 methylthiotransferase RimO HAMAP-Rule MF_01865

Short name=S12 MTTase HAMAP-Rule MF_01865
Short name=S12 methylthiotransferase HAMAP-Rule MF_01865
EC=2.-.-.- HAMAP-Rule MF_01865
Alternative name(s):
Ribosome maturation factor RimO HAMAP-Rule MF_01865
methylthiotransferase HAMAP-Rule MF_01865
Gene names
Name:rimO HAMAP-Rule MF_01865
Ordered Locus Names:Hden_0308 EMBL ADJ22133.1
OrganismHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) [Complete proteome] [HAMAP] EMBL ADJ22133.1
Taxonomic identifier582899 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium

Protein attributes

Sequence length461 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 By similarity. HAMAP-Rule MF_01865

Cofactor

Binds 2 4Fe-4S clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine By similarity. HAMAP-Rule MF_01865

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01865.

Sequence similarities

Belongs to the methylthiotransferase family. RimO subfamily. HAMAP-Rule MF_01865

Contains 1 MTTase N-terminal domain. HAMAP-Rule MF_01865

Contains 1 TRAM domain. HAMAP-Rule MF_01865

Contains MTTase N-terminal domain. SAAS SAAS005840

Contains TRAM domain. SAAS SAAS005840

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain25 – 135111MTTase N-terminal By similarity HAMAP-Rule MF_01865
Domain392 – 45867TRAM By similarity HAMAP-Rule MF_01865

Sites

Metal binding341Iron-sulfur (4Fe-4S) By similarity HAMAP-Rule MF_01865
Metal binding701Iron-sulfur (4Fe-4S) By similarity HAMAP-Rule MF_01865
Metal binding991Iron-sulfur (4Fe-4S) By similarity HAMAP-Rule MF_01865
Metal binding1661Iron-sulfur (4Fe-4S-S-AdoMet) By similarity HAMAP-Rule MF_01865
Metal binding1701Iron-sulfur (4Fe-4S-S-AdoMet) By similarity HAMAP-Rule MF_01865
Metal binding1731Iron-sulfur (4Fe-4S-S-AdoMet) By similarity HAMAP-Rule MF_01865

Sequences

Sequence LengthMass (Da)Tools
D8JQY1 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 6808AC1371C32673

FASTA46150,511
        10         20         30         40         50         60 
MANPSVKVNA KARRAAHGSD TAAAPKVGFV SLGCPKALVD SERIITKLRA EGYMIASDYE 

        70         80         90        100        110        120 
GADVVVVNTC GFLDSAKKES LDAIGEAMNA NGRVIVTGCF GVEENRIRDA HPGVLAVTGP 

       130        140        150        160        170        180 
HQYEQVVEAV HDAVPPLHDP FVDLVPPEGL RLTPRHYAYL KISEGCNNRC SFCIIPALRG 

       190        200        210        220        230        240 
DLASRPSNHV MGEAERLVNA GVKELLVISQ DTSAYGLDIK YAESAWKGAP LKARFLDLSR 

       250        260        270        280        290        300 
ALGDLGVWVR MHYVYPYPHV DDVIPLMADG KILPYLDIPF QHASPAVLKA MRRPAAQEKT 

       310        320        330        340        350        360 
AERIRRWREV CPDLAIRSTF IVGFPGETEE DFAFLLDWLK EAGINRAGCF KYEPVEGAKA 

       370        380        390        400        410        420 
NAIDGAVPDE VKEERWHRFM AVQKDVSSAQ LERKLGQTID VLIDEVDEDG AIGRSKWDAP 

       430        440        450        460 
EIDGNVFLNG ERDVNAGDIV RAKVVEAGDY DLWAERVSAN G 

« Hide

References

[1]"Genome sequences of eight morphologically diverse alphaproteobacteria."
US DOE Joint Genome Institute
Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002083 Genomic DNA. Translation: ADJ22133.1.
RefSeqYP_003754454.1. NC_014313.1.

3D structure databases

ProteinModelPortalD8JQY1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ22133; ADJ22133; Hden_0308.
GeneID9386185.
KEGGhdn:Hden_0308.
PATRIC42369115. VBIHypDen91677_0309.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000224766.
KOK14441.
OMAPHDPFID.

Enzyme and pathway databases

BioCycHDEN582899:GIWL-311-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.80.30.20. 1 hit.
HAMAPMF_01865. MTTase_RimO.
InterProIPR006638. Elp3/MiaB/NifB.
IPR023970. MeThioTfrase/rSAM.
IPR005839. Methylthiotransferase.
IPR020612. Methylthiotransferase_CS.
IPR013848. Methylthiotransferase_N.
IPR012340. NA-bd_OB-fold.
IPR005840. Ribosomal_S12_MeSTrfase_RimO.
IPR007197. rSAM.
IPR023404. rSAM_horseshoe.
IPR002792. TRAM_dom.
[Graphical view]
PANTHERPTHR11918. PTHR11918. 1 hit.
PfamPF04055. Radical_SAM. 1 hit.
PF00919. UPF0004. 1 hit.
[Graphical view]
SMARTSM00729. Elp3. 1 hit.
[Graphical view]
TIGRFAMsTIGR00089. TIGR00089. 1 hit.
TIGR01125. TIGR01125. 1 hit.
PROSITEPS51449. MTTASE_N. 1 hit.
PS01278. MTTASE_RADICAL. 1 hit.
PS50926. TRAM. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8JQY1_HYPDA
AccessionPrimary (citable) accession number: D8JQY1
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 11, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)