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Protein

Superoxide dismutase

Gene

sodB

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi27Divalent metal cationUniRule annotation1
Metal bindingi74Divalent metal cationUniRule annotation1
Metal bindingi157Divalent metal cationUniRule annotation1
Metal bindingi161Divalent metal cationUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotationImported
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:Hsero_1165Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
Proteomesi
  • UP000000329 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi757424.Hsero_1165

Structurei

3D structure databases

ProteinModelPortaliD8J1R1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 81Sod_Fe_NInterPro annotationAdd BLAST79
Domaini89 – 189Sod_Fe_CInterPro annotationAdd BLAST101

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CK4 Bacteria
COG0605 LUCA
HOGENOMiHOG000013584
KOiK04564
OMAiKWGSFDK
OrthoDBiPOG091H03Q7

Family and domain databases

Gene3Di1.10.287.990, 1 hit
2.40.500.20, 1 hit
InterProiView protein in InterPro
IPR001189 Mn/Fe_SOD
IPR019833 Mn/Fe_SOD_BS
IPR019832 Mn/Fe_SOD_C
IPR019831 Mn/Fe_SOD_N
IPR036324 Mn/Fe_SOD_N_sf
IPR036314 SOD_C_sf
PfamiView protein in Pfam
PF02777 Sod_Fe_C, 1 hit
PF00081 Sod_Fe_N, 1 hit
PIRSFiPIRSF000349 SODismutase, 1 hit
PRINTSiPR01703 MNSODISMTASE
SUPFAMiSSF46609 SSF46609, 1 hit
SSF54719 SSF54719, 1 hit
PROSITEiView protein in PROSITE
PS00088 SOD_MN, 1 hit

Sequencei

Sequence statusi: Complete.

D8J1R1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHTLPALPY DLDALAPTIS KETLEYHYGK HHQTYVTNLN NLIPGTEFEN
60 70 80 90 100
LSLEEIIKKS SGGIFNNAAQ VWNHTFYWNG LTPKGQGAPS GALADAINAK
110 120 130 140 150
WGSFDAFKAE FTKQGLANFG SGWTWLVKKA DGTLDIVNTT GAGTPLTTDS
160 170 180 190
KPLLTVDVWE HAYYIDYRNA RAKYVENYWG IINWDFVAKN FA
Length:192
Mass (Da):21,380
Last modified:October 5, 2010 - v1
Checksum:i7D073F250C0EE625
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA Translation: ADJ62682.1
RefSeqiWP_013233193.1, NC_014323.1

Genome annotation databases

EnsemblBacteriaiADJ62682; ADJ62682; Hsero_1165
GeneIDi29394046
KEGGihse:Hsero_1165

Similar proteinsi

Entry informationi

Entry nameiD8J1R1_HERSS
AccessioniPrimary (citable) accession number: D8J1R1
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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