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D8J1R1

- D8J1R1_HERSS

UniProt

D8J1R1 - D8J1R1_HERSS

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Protein

Superoxide dismutase

Gene

sodB

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-1165-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:Hsero_1165Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8J1R1.
SMRiD8J1R1. Positions 5-192.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000013584.
KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8J1R1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAHTLPALPY DLDALAPTIS KETLEYHYGK HHQTYVTNLN NLIPGTEFEN
60 70 80 90 100
LSLEEIIKKS SGGIFNNAAQ VWNHTFYWNG LTPKGQGAPS GALADAINAK
110 120 130 140 150
WGSFDAFKAE FTKQGLANFG SGWTWLVKKA DGTLDIVNTT GAGTPLTTDS
160 170 180 190
KPLLTVDVWE HAYYIDYRNA RAKYVENYWG IINWDFVAKN FA
Length:192
Mass (Da):21,380
Last modified:October 5, 2010 - v1
Checksum:i7D073F250C0EE625
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ62682.1.
RefSeqiYP_003774590.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ62682; ADJ62682; Hsero_1165.
GeneIDi9401766.
KEGGihse:Hsero_1165.
PATRICi42361023. VBIHerSer153339_1178.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ62682.1 .
RefSeqi YP_003774590.1. NC_014323.1.

3D structure databases

ProteinModelPortali D8J1R1.
SMRi D8J1R1. Positions 5-192.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ62682 ; ADJ62682 ; Hsero_1165 .
GeneIDi 9401766.
KEGGi hse:Hsero_1165.
PATRICi 42361023. VBIHerSer153339_1178.

Phylogenomic databases

HOGENOMi HOG000013584.
KOi K04564.

Enzyme and pathway databases

BioCyci HSER757424:GCTT-1165-MONOMER.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8J1R1_HERSS
AccessioniPrimary (citable) accession number: D8J1R1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 29, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3