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D8J1R1

- D8J1R1_HERSS

UniProt

D8J1R1 - D8J1R1_HERSS

Protein

Superoxide dismutase

Gene

sodB

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotationImported

    Enzyme and pathway databases

    BioCyciHSER757424:GCTT-1165-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodBImported
    Ordered Locus Names:Hsero_1165Imported
    OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
    Taxonomic identifieri757424 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
    ProteomesiUP000000329: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD8J1R1.
    SMRiD8J1R1. Positions 5-192.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000013584.
    KOiK04564.

    Family and domain databases

    InterProiIPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view]
    PANTHERiPTHR11404. PTHR11404. 1 hit.
    PfamiPF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000349. SODismutase. 1 hit.
    PRINTSiPR01703. MNSODISMTASE.
    SUPFAMiSSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEiPS00088. SOD_MN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8J1R1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAHTLPALPY DLDALAPTIS KETLEYHYGK HHQTYVTNLN NLIPGTEFEN    50
    LSLEEIIKKS SGGIFNNAAQ VWNHTFYWNG LTPKGQGAPS GALADAINAK 100
    WGSFDAFKAE FTKQGLANFG SGWTWLVKKA DGTLDIVNTT GAGTPLTTDS 150
    KPLLTVDVWE HAYYIDYRNA RAKYVENYWG IINWDFVAKN FA 192
    Length:192
    Mass (Da):21,380
    Last modified:October 5, 2010 - v1
    Checksum:i7D073F250C0EE625
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ62682.1.
    RefSeqiYP_003774590.1. NC_014323.1.

    Genome annotation databases

    EnsemblBacteriaiADJ62682; ADJ62682; Hsero_1165.
    GeneIDi9401766.
    KEGGihse:Hsero_1165.
    PATRICi42361023. VBIHerSer153339_1178.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ62682.1 .
    RefSeqi YP_003774590.1. NC_014323.1.

    3D structure databases

    ProteinModelPortali D8J1R1.
    SMRi D8J1R1. Positions 5-192.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ62682 ; ADJ62682 ; Hsero_1165 .
    GeneIDi 9401766.
    KEGGi hse:Hsero_1165.
    PATRICi 42361023. VBIHerSer153339_1178.

    Phylogenomic databases

    HOGENOMi HOG000013584.
    KOi K04564.

    Enzyme and pathway databases

    BioCyci HSER757424:GCTT-1165-MONOMER.

    Family and domain databases

    InterProi IPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view ]
    PANTHERi PTHR11404. PTHR11404. 1 hit.
    Pfami PF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000349. SODismutase. 1 hit.
    PRINTSi PR01703. MNSODISMTASE.
    SUPFAMi SSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEi PS00088. SOD_MN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
      Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
      , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SmR1Imported.

    Entry informationi

    Entry nameiD8J1R1_HERSS
    AccessioniPrimary (citable) accession number: D8J1R1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3