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D8IZS4

- D8IZS4_HERSS

UniProt

D8IZS4 - D8IZS4_HERSS

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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

Cofactori

Note: Magnesium.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei180 – 1801UniRule annotation
Active sitei618 – 6181UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, PyruvateImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2925-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotationImported
Ordered Locus Names:Hsero_2925Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000238647.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IZS4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATTNPTKRS ARSAPSTSRS AGANPAATSI TPSKPARGAD KDAPLKEDIR
60 70 80 90 100
LLGRLLGEVL REQEGDEVFE VVETIRQTAV RFRRESDAKA GAELDKLLKK
110 120 130 140 150
LTRDQTNSVV RAFSYFSHLA NIAEDQHHNR RRRAHLLAGS EAQPGSVAYA
160 170 180 190 200
LSRLDDAGVS GAQVRNFLKE ALVSPVLTAH PTEVQRKSIL DAEREIARLV
210 220 230 240 250
AERDLPLTPR ELRHNTELLR ARIATLWQTR MLRYTKLTVA DEIENALSYY
260 270 280 290 300
RTTFLRELPA LYEDIEAEID SQFPARGKSR PTELPPYVQM GSWIGGDRDG
310 320 330 340 350
NPNVNAGTMQ HALQRQSTVV FDYYLEEVHT LGAELSISTL MVDASPELLA
360 370 380 390 400
LAATSPDHSE HRADEPYRRA LIGIYARLAA TARALGAINI LRQEVGAAAP
410 420 430 440 450
YETPEQCVAE LDVLVSSLQA HHGAALVKPR LAGLKRAVEI FGFHLATLDM
460 470 480 490 500
RQSSDIHERV LADLFAKAQV EADYAALNEE RKIALLLGEL SRPRLLHSPY
510 520 530 540 550
LEYSEQTDSE LSILRAAREI RRRYGERAIR NYIISHTETL SDLLEVLLLQ
560 570 580 590 600
KETGLLHIEG NQLRELELMV IPLFETIPDL RCAAEIMRGW LSLPQVKGLI
610 620 630 640 650
AKHGKLQEVM LGYSDSNKDG GFLTSNWELY KAENQLVELF NEAGVKLRLF
660 670 680 690 700
HGRGGTVGRG GGPSYQAILA QPPGTVNGQI RLTEQGEIIA SKFANPEIGR
710 720 730 740 750
RNLELLVAAT LEASLMPTNA DDKEARKLAE FERVMEELSE RAYRAYRNLV
760 770 780 790 800
YETPGFTDYF FAATPIAEIA QLNIGSRPAS RKATQRIEDL RAIPWGFSWG
810 820 830 840 850
QCRLLFPGWY GFGSAVSGWL EDAGNAKEAA RRLATLRAMC KEWPFFAALL
860 870 880 890 900
SNMDMVLSKT DLAVASRYAG LVADRKLRNA IFGRITDEHE RTSAMLSTIT
910 920 930 940 950
GSKERLAANP LLARSIKNRF AYLDPLNHLQ VELIKRHRAT VAAKRTPEER
960 970
VQRGIHLTIN GVAAGLRNTG
Length:970
Mass (Da):107,904
Last modified:October 5, 2010 - v1
Checksum:i5F4EA1FA753D97C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ64414.1.
RefSeqiWP_013234887.1. NC_014323.1.
YP_003776322.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ64414; ADJ64414; Hsero_2925.
GeneIDi9403526.
KEGGihse:Hsero_2925.
PATRICi42364645. VBIHerSer153339_2964.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ64414.1 .
RefSeqi WP_013234887.1. NC_014323.1.
YP_003776322.1. NC_014323.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ64414 ; ADJ64414 ; Hsero_2925 .
GeneIDi 9403526.
KEGGi hse:Hsero_2925.
PATRICi 42364645. VBIHerSer153339_2964.

Phylogenomic databases

HOGENOMi HOG000238647.
KOi K01595.

Enzyme and pathway databases

BioCyci HSER757424:GCTT-2925-MONOMER.

Family and domain databases

HAMAPi MF_00595. PEPcase_type1.
InterProi IPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view ]
Pfami PF00311. PEPcase. 1 hit.
[Graphical view ]
PRINTSi PR00150. PEPCARBXLASE.
SUPFAMi SSF51621. SSF51621. 1 hit.
PROSITEi PS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IZS4_HERSS
AccessioniPrimary (citable) accession number: D8IZS4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 26, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3