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D8IZS4

- D8IZS4_HERSS

UniProt

D8IZS4 - D8IZS4_HERSS

Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotation

    Catalytic activityi

    Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

    Cofactori

    Magnesium.UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei180 – 1801UniRule annotation
    Active sitei618 – 6181UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. carbon fixation Source: UniProtKB-HAMAP
    2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
    3. tricarboxylic acid cycle Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbon dioxide fixationUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, PyruvateImported

    Enzyme and pathway databases

    BioCyciHSER757424:GCTT-2925-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
    Short name:
    PEPCUniRule annotation
    Short name:
    PEPCaseUniRule annotation
    Gene namesi
    Name:ppcUniRule annotationImported
    Ordered Locus Names:Hsero_2925Imported
    OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
    Taxonomic identifieri757424 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
    ProteomesiUP000000329: Chromosome

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PEPCase type 1 family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000238647.
    KOiK01595.

    Family and domain databases

    HAMAPiMF_00595. PEPcase_type1.
    InterProiIPR021135. PEP_COase.
    IPR018129. PEP_COase_AS.
    IPR022805. PEP_COase_bac/pln-type.
    IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
    [Graphical view]
    PfamiPF00311. PEPcase. 1 hit.
    [Graphical view]
    PRINTSiPR00150. PEPCARBXLASE.
    SUPFAMiSSF51621. SSF51621. 1 hit.
    PROSITEiPS00781. PEPCASE_1. 1 hit.
    PS00393. PEPCASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8IZS4-1 [UniParc]FASTAAdd to Basket

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    MATTNPTKRS ARSAPSTSRS AGANPAATSI TPSKPARGAD KDAPLKEDIR    50
    LLGRLLGEVL REQEGDEVFE VVETIRQTAV RFRRESDAKA GAELDKLLKK 100
    LTRDQTNSVV RAFSYFSHLA NIAEDQHHNR RRRAHLLAGS EAQPGSVAYA 150
    LSRLDDAGVS GAQVRNFLKE ALVSPVLTAH PTEVQRKSIL DAEREIARLV 200
    AERDLPLTPR ELRHNTELLR ARIATLWQTR MLRYTKLTVA DEIENALSYY 250
    RTTFLRELPA LYEDIEAEID SQFPARGKSR PTELPPYVQM GSWIGGDRDG 300
    NPNVNAGTMQ HALQRQSTVV FDYYLEEVHT LGAELSISTL MVDASPELLA 350
    LAATSPDHSE HRADEPYRRA LIGIYARLAA TARALGAINI LRQEVGAAAP 400
    YETPEQCVAE LDVLVSSLQA HHGAALVKPR LAGLKRAVEI FGFHLATLDM 450
    RQSSDIHERV LADLFAKAQV EADYAALNEE RKIALLLGEL SRPRLLHSPY 500
    LEYSEQTDSE LSILRAAREI RRRYGERAIR NYIISHTETL SDLLEVLLLQ 550
    KETGLLHIEG NQLRELELMV IPLFETIPDL RCAAEIMRGW LSLPQVKGLI 600
    AKHGKLQEVM LGYSDSNKDG GFLTSNWELY KAENQLVELF NEAGVKLRLF 650
    HGRGGTVGRG GGPSYQAILA QPPGTVNGQI RLTEQGEIIA SKFANPEIGR 700
    RNLELLVAAT LEASLMPTNA DDKEARKLAE FERVMEELSE RAYRAYRNLV 750
    YETPGFTDYF FAATPIAEIA QLNIGSRPAS RKATQRIEDL RAIPWGFSWG 800
    QCRLLFPGWY GFGSAVSGWL EDAGNAKEAA RRLATLRAMC KEWPFFAALL 850
    SNMDMVLSKT DLAVASRYAG LVADRKLRNA IFGRITDEHE RTSAMLSTIT 900
    GSKERLAANP LLARSIKNRF AYLDPLNHLQ VELIKRHRAT VAAKRTPEER 950
    VQRGIHLTIN GVAAGLRNTG 970
    Length:970
    Mass (Da):107,904
    Last modified:October 5, 2010 - v1
    Checksum:i5F4EA1FA753D97C5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ64414.1.
    RefSeqiYP_003776322.1. NC_014323.1.

    Genome annotation databases

    EnsemblBacteriaiADJ64414; ADJ64414; Hsero_2925.
    GeneIDi9403526.
    KEGGihse:Hsero_2925.
    PATRICi42364645. VBIHerSer153339_2964.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ64414.1 .
    RefSeqi YP_003776322.1. NC_014323.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ64414 ; ADJ64414 ; Hsero_2925 .
    GeneIDi 9403526.
    KEGGi hse:Hsero_2925.
    PATRICi 42364645. VBIHerSer153339_2964.

    Phylogenomic databases

    HOGENOMi HOG000238647.
    KOi K01595.

    Enzyme and pathway databases

    BioCyci HSER757424:GCTT-2925-MONOMER.

    Family and domain databases

    HAMAPi MF_00595. PEPcase_type1.
    InterProi IPR021135. PEP_COase.
    IPR018129. PEP_COase_AS.
    IPR022805. PEP_COase_bac/pln-type.
    IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
    [Graphical view ]
    Pfami PF00311. PEPcase. 1 hit.
    [Graphical view ]
    PRINTSi PR00150. PEPCARBXLASE.
    SUPFAMi SSF51621. SSF51621. 1 hit.
    PROSITEi PS00781. PEPCASE_1. 1 hit.
    PS00393. PEPCASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
      Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
      , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SmR1Imported.

    Entry informationi

    Entry nameiD8IZS4_HERSS
    AccessioniPrimary (citable) accession number: D8IZS4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3