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D8IZS4

- D8IZS4_HERSS

UniProt

D8IZS4 - D8IZS4_HERSS

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Protein

Phosphoenolpyruvate carboxylase

Gene
ppc, Hsero_2925
Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle By similarity.UniRule annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotations

Cofactori

Magnesium By similarity.UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei180 – 1801 By similarityUniRule annotation
Active sitei618 – 6181 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, PyruvateImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2925-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotationImported
Ordered Locus Names:Hsero_2925Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000238647.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IZS4-1 [UniParc]FASTAAdd to Basket

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MATTNPTKRS ARSAPSTSRS AGANPAATSI TPSKPARGAD KDAPLKEDIR    50
LLGRLLGEVL REQEGDEVFE VVETIRQTAV RFRRESDAKA GAELDKLLKK 100
LTRDQTNSVV RAFSYFSHLA NIAEDQHHNR RRRAHLLAGS EAQPGSVAYA 150
LSRLDDAGVS GAQVRNFLKE ALVSPVLTAH PTEVQRKSIL DAEREIARLV 200
AERDLPLTPR ELRHNTELLR ARIATLWQTR MLRYTKLTVA DEIENALSYY 250
RTTFLRELPA LYEDIEAEID SQFPARGKSR PTELPPYVQM GSWIGGDRDG 300
NPNVNAGTMQ HALQRQSTVV FDYYLEEVHT LGAELSISTL MVDASPELLA 350
LAATSPDHSE HRADEPYRRA LIGIYARLAA TARALGAINI LRQEVGAAAP 400
YETPEQCVAE LDVLVSSLQA HHGAALVKPR LAGLKRAVEI FGFHLATLDM 450
RQSSDIHERV LADLFAKAQV EADYAALNEE RKIALLLGEL SRPRLLHSPY 500
LEYSEQTDSE LSILRAAREI RRRYGERAIR NYIISHTETL SDLLEVLLLQ 550
KETGLLHIEG NQLRELELMV IPLFETIPDL RCAAEIMRGW LSLPQVKGLI 600
AKHGKLQEVM LGYSDSNKDG GFLTSNWELY KAENQLVELF NEAGVKLRLF 650
HGRGGTVGRG GGPSYQAILA QPPGTVNGQI RLTEQGEIIA SKFANPEIGR 700
RNLELLVAAT LEASLMPTNA DDKEARKLAE FERVMEELSE RAYRAYRNLV 750
YETPGFTDYF FAATPIAEIA QLNIGSRPAS RKATQRIEDL RAIPWGFSWG 800
QCRLLFPGWY GFGSAVSGWL EDAGNAKEAA RRLATLRAMC KEWPFFAALL 850
SNMDMVLSKT DLAVASRYAG LVADRKLRNA IFGRITDEHE RTSAMLSTIT 900
GSKERLAANP LLARSIKNRF AYLDPLNHLQ VELIKRHRAT VAAKRTPEER 950
VQRGIHLTIN GVAAGLRNTG 970
Length:970
Mass (Da):107,904
Last modified:October 5, 2010 - v1
Checksum:i5F4EA1FA753D97C5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002039 Genomic DNA. Translation: ADJ64414.1.
RefSeqiYP_003776322.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ64414; ADJ64414; Hsero_2925.
GeneIDi9403526.
KEGGihse:Hsero_2925.
PATRICi42364645. VBIHerSer153339_2964.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002039 Genomic DNA. Translation: ADJ64414.1 .
RefSeqi YP_003776322.1. NC_014323.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ64414 ; ADJ64414 ; Hsero_2925 .
GeneIDi 9403526.
KEGGi hse:Hsero_2925.
PATRICi 42364645. VBIHerSer153339_2964.

Phylogenomic databases

HOGENOMi HOG000238647.
KOi K01595.

Enzyme and pathway databases

BioCyci HSER757424:GCTT-2925-MONOMER.

Family and domain databases

HAMAPi MF_00595. PEPcase_type1.
InterProi IPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view ]
Pfami PF00311. PEPcase. 1 hit.
[Graphical view ]
PRINTSi PR00150. PEPCARBXLASE.
SUPFAMi SSF51621. SSF51621. 1 hit.
PROSITEi PS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IZS4_HERSS
AccessioniPrimary (citable) accession number: D8IZS4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 11, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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