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Protein
Submitted name:

3-deoxy-d-manno-octulosonic-acid (KDO) transferase protein

Gene

kdtA

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. transferase activity Source: UniProtKB-KW

GO - Biological processi

  1. biosynthetic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

TransferaseImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-475-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
3-deoxy-d-manno-octulosonic-acid (KDO) transferase proteinImported
Gene namesi
Name:kdtAImported
Ordered Locus Names:Hsero_0475Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8IXC5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000257156.
KOiK02527.

Family and domain databases

InterProiIPR001296. Glyco_trans_1.
IPR007507. Glycos_transf_N.
[Graphical view]
PfamiPF00534. Glycos_transf_1. 1 hit.
PF04413. Glycos_transf_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IXC5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRWLYSALWW FAMPLVLLRL WRRGRQEPGY RAHVAERLGF YPRLPDPQAR
60 70 80 90 100
FIWVHAVSVG ETRAAEPLVD ALLSRYPDCK ILLTCMTATG RATGAQVFGK
110 120 130 140 150
HGARVVQSFL PYDTGWMCSR FLRHFRPLAC ILMETEVWPN LIRQCRRHDV
160 170 180 190 200
PVMLANARLS ERSLRRGQRF ASLLRPAAEA IDVVGAQSDG DARRLLAFGA
210 220 230 240 250
RHVEVTGSLK FDVQPPMQVV ERGREWKRAL GERKVLLCAS TREGEEVLIL
260 270 280 290 300
DALAKLGRPD WLTVIVPRHP QRFDEVAALI RARGLRLRRR SELAQDFAVE
310 320 330 340 350
DVDVVLGDSM GEMFAYYALS DVSFIGGSLL PLGGQNLIEA LALGKPVLIG
360 370 380 390 400
EHTFNFLRIT EEAVADGAAV RVGDAVELLR QWSILIAEPD RIDEMAQAAL
410 420
SFAQRHQGAT DRSLVLLAPL LERAHARR
Length:428
Mass (Da):48,176
Last modified:October 5, 2010 - v1
Checksum:i64F0EB876B8FB694
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ62000.1.
RefSeqiWP_013232518.1. NC_014323.1.
YP_003773908.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ62000; ADJ62000; Hsero_0475.
GeneIDi9401076.
KEGGihse:Hsero_0475.
PATRICi42359623. VBIHerSer153339_0485.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ62000.1.
RefSeqiWP_013232518.1. NC_014323.1.
YP_003773908.1. NC_014323.1.

3D structure databases

ProteinModelPortaliD8IXC5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADJ62000; ADJ62000; Hsero_0475.
GeneIDi9401076.
KEGGihse:Hsero_0475.
PATRICi42359623. VBIHerSer153339_0485.

Phylogenomic databases

HOGENOMiHOG000257156.
KOiK02527.

Enzyme and pathway databases

BioCyciHSER757424:GCTT-475-MONOMER.

Family and domain databases

InterProiIPR001296. Glyco_trans_1.
IPR007507. Glycos_transf_N.
[Graphical view]
PfamiPF00534. Glycos_transf_1. 1 hit.
PF04413. Glycos_transf_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IXC5_HERSS
AccessioniPrimary (citable) accession number: D8IXC5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 7, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.