D8IUX0 (D8IUX0_HERSS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase HAMAP-Rule MF_01039
Short name=BPG-dependent PGAM HAMAP-Rule MF_01039
Short name=PGAM HAMAP-Rule MF_01039
Short name=Phosphoglyceromutase HAMAP-Rule MF_01039
Short name=dPGM HAMAP-Rule MF_01039
EC=5.4.2.1 HAMAP-Rule MF_01039

Gene names

Name:	gpmA HAMAP-Rule MF_01039
Ordered Locus Names:	Hsero_0163

Organism

Herbaspirillum seropedicae (strain SmR1) [Complete proteome] [HAMAP] EMBL ADJ61689.1

Taxonomic identifier

757424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Oxalobacteraceae › Herbaspirillum › Herbaspirillum seropedicae

Protein attributes

Sequence length	248 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate By similarity. HAMAP-Rule MF_01039 SAAS SAAS013078
Catalytic activity	2-phospho-D-glycerate = 3-phospho-D-glycerate. HAMAP-Rule MF_01039 SAAS SAAS013078
Pathway	Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5. HAMAP-Rule MF_01039 SAAS SAAS013078
Sequence similarities	Belongs to the phosphoglycerate mutase family. BPG-dependent PGAM subfamily. HAMAP-Rule MF_01039

Ontologies

Keywords
Biological process	Glycolysis HAMAP-Rule MF_01039 SAAS SAAS013078
Molecular function	Isomerase HAMAP-Rule MF_01039 SAAS SAAS013078 EMBL ADJ61689.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glycolysis Inferred from electronic annotation. Source: HAMAP
Molecular_function	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	9	1	Tele-phosphohistidine intermediate By similarity HAMAP-Rule MF_01039
	Active site	182	1	By similarity HAMAP-Rule MF_01039
	Site	60	1	Interaction with carboxyl group of phosphoglycerates By similarity HAMAP-Rule MF_01039

Sequences

	Sequence		Length	Mass (Da)
	D8IUX0 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 386510D4E2F880BC	FASTA	248	27,726
	10 20 30 40 50 60 MYKIVFMRHG ESTWNLANRF TGWVDVDLTE KGVAEARQAG KLLKEAGFTF DLAYTSVLKR 70 80 90 100 110 120 AIRTLWTTLD EMDQMYIPIK NDWRLNERHY GALQGLNKAE TAAQYGDEQV LVWRRSYDTP 130 140 150 160 170 180 PNPLTPGEER DAFGDPRYAG LSREQVPLTE CLKDTVARVL PAWNDAIAPA IRAGKQIIIS 190 200 210 220 230 240 AHGNSLRALI KYLDGISDND IVGLNIPNGQ PLVYELDADL KPIKSYYLGD QSAIEAALKA VANQGKSK

References

[1]

"The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria." Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R. , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SmR1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002039 Genomic DNA. Translation: ADJ61689.1.
RefSeq	YP_003773597.1. NC_014323.1.
3D structure databases
ProteinModelPortal	D8IUX0.
SMR	D8IUX0. Positions 3-236.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ61689; ADJ61689; Hsero_0163.
GeneID	9400764.
KEGG	hse:Hsero_0163.
PATRIC	42358983. VBIHerSer153339_0166.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000221682.
KO	K01834.
Enzyme and pathway databases
UniPathway	UPA00109; UER00186.
Family and domain databases
HAMAP	MF_01039. PGAM_GpmA.
InterPro	IPR013078. His_Pase_superF_clade-1. IPR005952. Phosphogly_mut1. [Graphical view]
PANTHER	PTHR11931. PTHR11931. 1 hit.
Pfam	PF00300. His_Phos_1. 1 hit. [Graphical view]
SMART	SM00855. PGAM. 1 hit. [Graphical view]
TIGRFAMs	TIGR01258. pgm_1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D8IUX0_HERSS

Accession

Primary (citable) accession number: D8IUX0

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)