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D8IUB5

- D8IUB5_HERSS

UniProt

D8IUB5 - D8IUB5_HERSS

Protein
Submitted name:

ATP-dependent DNA ligase protein

Gene

Hsero_2278

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciHSER757424:GCTT-2278-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Hsero_2278Imported
    OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
    Taxonomic identifieri757424 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
    ProteomesiUP000000329: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD8IUB5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8IUB5-1 [UniParc]FASTAAdd to Basket

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    MREFSRLYGE LDATTSTTRK LAALEDYFGR ADPADAAWAV YFLAGGKPRQ    50
    AVPTSLLKQC AMEYAQIDEW LFEECYQSVG DLAETIAHIL PPASGSNPLG 100
    LARWVEERIA PLRGAAPETI RAALFQAWDE LDWQGRFLLS KLIGGGFRVG 150
    VSRLLVTRAL AAVAQLDAKL VAQRMVGWTD GRARPDAERF ARLIAPADSA 200
    DQPLQGGQPY PFFLAHPLMD APATLGPIQQ WQVEWKYDGI RAQLVRRHGQ 250
    NWLWSRGEEL ITERFPELAA LPLPDGTVID GEIVIRHPDA GLAAERVAPF 300
    SELQKRIGRK NLSARLLAEL PAGLIAYDLL EQDGCDLRGL PQSERRRRLE 350
    ALVGSHPAAA LMLAPTLTAK DWDALAQLRA SARERGVEGM MLKDIDARYG 400
    IGRTRNDGTW WKWKIDPYSI DAVLIYAQAG HGRRASLYTD YTFALWDGPP 450
    EAGSQRKLVP FAKAYSGLTD AEIAVVDQVI RKSTIEKFGP VRSVQPSMVF 500
    EIGFEGIALS SRHKAGMAVR FPRILRQRLD KTVEQADTLA TLRALLPPSP 550
    QPEQR 555
    Length:555
    Mass (Da):61,572
    Last modified:October 5, 2010 - v1
    Checksum:i7ADEBE85C8B667CD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ63777.1.
    RefSeqiYP_003775685.1. NC_014323.1.

    Genome annotation databases

    EnsemblBacteriaiADJ63777; ADJ63777; Hsero_2278.
    GeneIDi9402879.
    KEGGihse:Hsero_2278.
    PATRICi42363323. VBIHerSer153339_2310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ63777.1 .
    RefSeqi YP_003775685.1. NC_014323.1.

    3D structure databases

    ProteinModelPortali D8IUB5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ63777 ; ADJ63777 ; Hsero_2278 .
    GeneIDi 9402879.
    KEGGi hse:Hsero_2278.
    PATRICi 42363323. VBIHerSer153339_2310.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci HSER757424:GCTT-2278-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
      Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
      , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SmR1Imported.

    Entry informationi

    Entry nameiD8IUB5_HERSS
    AccessioniPrimary (citable) accession number: D8IUB5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3