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Protein
Submitted name:

ATP-dependent DNA ligase protein

Gene

Hsero_2278

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2278-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Hsero_2278Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi757424.Hsero_2278.

Structurei

3D structure databases

ProteinModelPortaliD8IUB5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IUB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREFSRLYGE LDATTSTTRK LAALEDYFGR ADPADAAWAV YFLAGGKPRQ
60 70 80 90 100
AVPTSLLKQC AMEYAQIDEW LFEECYQSVG DLAETIAHIL PPASGSNPLG
110 120 130 140 150
LARWVEERIA PLRGAAPETI RAALFQAWDE LDWQGRFLLS KLIGGGFRVG
160 170 180 190 200
VSRLLVTRAL AAVAQLDAKL VAQRMVGWTD GRARPDAERF ARLIAPADSA
210 220 230 240 250
DQPLQGGQPY PFFLAHPLMD APATLGPIQQ WQVEWKYDGI RAQLVRRHGQ
260 270 280 290 300
NWLWSRGEEL ITERFPELAA LPLPDGTVID GEIVIRHPDA GLAAERVAPF
310 320 330 340 350
SELQKRIGRK NLSARLLAEL PAGLIAYDLL EQDGCDLRGL PQSERRRRLE
360 370 380 390 400
ALVGSHPAAA LMLAPTLTAK DWDALAQLRA SARERGVEGM MLKDIDARYG
410 420 430 440 450
IGRTRNDGTW WKWKIDPYSI DAVLIYAQAG HGRRASLYTD YTFALWDGPP
460 470 480 490 500
EAGSQRKLVP FAKAYSGLTD AEIAVVDQVI RKSTIEKFGP VRSVQPSMVF
510 520 530 540 550
EIGFEGIALS SRHKAGMAVR FPRILRQRLD KTVEQADTLA TLRALLPPSP

QPEQR
Length:555
Mass (Da):61,572
Last modified:October 5, 2010 - v1
Checksum:i7ADEBE85C8B667CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ63777.1.
RefSeqiWP_013234256.1. NC_014323.1.
YP_003775685.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ63777; ADJ63777; Hsero_2278.
KEGGihse:Hsero_2278.
PATRICi42363323. VBIHerSer153339_2310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ63777.1.
RefSeqiWP_013234256.1. NC_014323.1.
YP_003775685.1. NC_014323.1.

3D structure databases

ProteinModelPortaliD8IUB5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi757424.Hsero_2278.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADJ63777; ADJ63777; Hsero_2278.
KEGGihse:Hsero_2278.
PATRICi42363323. VBIHerSer153339_2310.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2278-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IUB5_HERSS
AccessioniPrimary (citable) accession number: D8IUB5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 24, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.