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D8IUB5

- D8IUB5_HERSS

UniProt

D8IUB5 - D8IUB5_HERSS

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Protein
Submitted name:

ATP-dependent DNA ligase protein

Gene
Hsero_2278
Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2278-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Hsero_2278Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8IUB5.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IUB5-1 [UniParc]FASTAAdd to Basket

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MREFSRLYGE LDATTSTTRK LAALEDYFGR ADPADAAWAV YFLAGGKPRQ    50
AVPTSLLKQC AMEYAQIDEW LFEECYQSVG DLAETIAHIL PPASGSNPLG 100
LARWVEERIA PLRGAAPETI RAALFQAWDE LDWQGRFLLS KLIGGGFRVG 150
VSRLLVTRAL AAVAQLDAKL VAQRMVGWTD GRARPDAERF ARLIAPADSA 200
DQPLQGGQPY PFFLAHPLMD APATLGPIQQ WQVEWKYDGI RAQLVRRHGQ 250
NWLWSRGEEL ITERFPELAA LPLPDGTVID GEIVIRHPDA GLAAERVAPF 300
SELQKRIGRK NLSARLLAEL PAGLIAYDLL EQDGCDLRGL PQSERRRRLE 350
ALVGSHPAAA LMLAPTLTAK DWDALAQLRA SARERGVEGM MLKDIDARYG 400
IGRTRNDGTW WKWKIDPYSI DAVLIYAQAG HGRRASLYTD YTFALWDGPP 450
EAGSQRKLVP FAKAYSGLTD AEIAVVDQVI RKSTIEKFGP VRSVQPSMVF 500
EIGFEGIALS SRHKAGMAVR FPRILRQRLD KTVEQADTLA TLRALLPPSP 550
QPEQR 555
Length:555
Mass (Da):61,572
Last modified:October 5, 2010 - v1
Checksum:i7ADEBE85C8B667CD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002039 Genomic DNA. Translation: ADJ63777.1.
RefSeqiYP_003775685.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ63777; ADJ63777; Hsero_2278.
GeneIDi9402879.
KEGGihse:Hsero_2278.
PATRICi42363323. VBIHerSer153339_2310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002039 Genomic DNA. Translation: ADJ63777.1 .
RefSeqi YP_003775685.1. NC_014323.1.

3D structure databases

ProteinModelPortali D8IUB5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ63777 ; ADJ63777 ; Hsero_2278 .
GeneIDi 9402879.
KEGGi hse:Hsero_2278.
PATRICi 42363323. VBIHerSer153339_2310.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.

Enzyme and pathway databases

BioCyci HSER757424:GCTT-2278-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IUB5_HERSS
AccessioniPrimary (citable) accession number: D8IUB5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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