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D8IUB5 (D8IUB5_HERSS) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ADJ63777.1
Gene names
Ordered Locus Names:Hsero_2278 EMBL ADJ63777.1
OrganismHerbaspirillum seropedicae (strain SmR1) [Complete proteome] [HAMAP] EMBL ADJ63777.1
Taxonomic identifier757424 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum

Protein attributes

Sequence length555 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D8IUB5 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 7ADEBE85C8B667CD

FASTA55561,572
        10         20         30         40         50         60 
MREFSRLYGE LDATTSTTRK LAALEDYFGR ADPADAAWAV YFLAGGKPRQ AVPTSLLKQC 

        70         80         90        100        110        120 
AMEYAQIDEW LFEECYQSVG DLAETIAHIL PPASGSNPLG LARWVEERIA PLRGAAPETI 

       130        140        150        160        170        180 
RAALFQAWDE LDWQGRFLLS KLIGGGFRVG VSRLLVTRAL AAVAQLDAKL VAQRMVGWTD 

       190        200        210        220        230        240 
GRARPDAERF ARLIAPADSA DQPLQGGQPY PFFLAHPLMD APATLGPIQQ WQVEWKYDGI 

       250        260        270        280        290        300 
RAQLVRRHGQ NWLWSRGEEL ITERFPELAA LPLPDGTVID GEIVIRHPDA GLAAERVAPF 

       310        320        330        340        350        360 
SELQKRIGRK NLSARLLAEL PAGLIAYDLL EQDGCDLRGL PQSERRRRLE ALVGSHPAAA 

       370        380        390        400        410        420 
LMLAPTLTAK DWDALAQLRA SARERGVEGM MLKDIDARYG IGRTRNDGTW WKWKIDPYSI 

       430        440        450        460        470        480 
DAVLIYAQAG HGRRASLYTD YTFALWDGPP EAGSQRKLVP FAKAYSGLTD AEIAVVDQVI 

       490        500        510        520        530        540 
RKSTIEKFGP VRSVQPSMVF EIGFEGIALS SRHKAGMAVR FPRILRQRLD KTVEQADTLA 

       550 
TLRALLPPSP QPEQR 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002039 Genomic DNA. Translation: ADJ63777.1.
RefSeqYP_003775685.1. NC_014323.1.

3D structure databases

ProteinModelPortalD8IUB5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ63777; ADJ63777; Hsero_2278.
GeneID9402879.
KEGGhse:Hsero_2278.
PATRIC42363323. VBIHerSer153339_2310.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.

Enzyme and pathway databases

BioCycHSER757424:GCTT-2278-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8IUB5_HERSS
AccessionPrimary (citable) accession number: D8IUB5
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)