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D8IUB5

- D8IUB5_HERSS

UniProt

D8IUB5 - D8IUB5_HERSS

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Protein
Submitted name:

ATP-dependent DNA ligase protein

Gene

Hsero_2278

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2278-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Hsero_2278Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8IUB5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IUB5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MREFSRLYGE LDATTSTTRK LAALEDYFGR ADPADAAWAV YFLAGGKPRQ
60 70 80 90 100
AVPTSLLKQC AMEYAQIDEW LFEECYQSVG DLAETIAHIL PPASGSNPLG
110 120 130 140 150
LARWVEERIA PLRGAAPETI RAALFQAWDE LDWQGRFLLS KLIGGGFRVG
160 170 180 190 200
VSRLLVTRAL AAVAQLDAKL VAQRMVGWTD GRARPDAERF ARLIAPADSA
210 220 230 240 250
DQPLQGGQPY PFFLAHPLMD APATLGPIQQ WQVEWKYDGI RAQLVRRHGQ
260 270 280 290 300
NWLWSRGEEL ITERFPELAA LPLPDGTVID GEIVIRHPDA GLAAERVAPF
310 320 330 340 350
SELQKRIGRK NLSARLLAEL PAGLIAYDLL EQDGCDLRGL PQSERRRRLE
360 370 380 390 400
ALVGSHPAAA LMLAPTLTAK DWDALAQLRA SARERGVEGM MLKDIDARYG
410 420 430 440 450
IGRTRNDGTW WKWKIDPYSI DAVLIYAQAG HGRRASLYTD YTFALWDGPP
460 470 480 490 500
EAGSQRKLVP FAKAYSGLTD AEIAVVDQVI RKSTIEKFGP VRSVQPSMVF
510 520 530 540 550
EIGFEGIALS SRHKAGMAVR FPRILRQRLD KTVEQADTLA TLRALLPPSP

QPEQR
Length:555
Mass (Da):61,572
Last modified:October 5, 2010 - v1
Checksum:i7ADEBE85C8B667CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ63777.1.
RefSeqiYP_003775685.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ63777; ADJ63777; Hsero_2278.
GeneIDi9402879.
KEGGihse:Hsero_2278.
PATRICi42363323. VBIHerSer153339_2310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ63777.1 .
RefSeqi YP_003775685.1. NC_014323.1.

3D structure databases

ProteinModelPortali D8IUB5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ63777 ; ADJ63777 ; Hsero_2278 .
GeneIDi 9402879.
KEGGi hse:Hsero_2278.
PATRICi 42363323. VBIHerSer153339_2310.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.

Enzyme and pathway databases

BioCyci HSER757424:GCTT-2278-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IUB5_HERSS
AccessioniPrimary (citable) accession number: D8IUB5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 1, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3