D8IUB5 (D8IUB5_HERSS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase protein EMBL ADJ63777.1
EC=6.5.1.1 EMBL ADJ63777.1

Gene names

Ordered Locus Names:

Hsero_2278

Organism

Herbaspirillum seropedicae (strain SmR1) [Complete proteome] [HAMAP] EMBL ADJ63777.1

Taxonomic identifier

757424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Oxalobacteraceae › Herbaspirillum › Herbaspirillum seropedicae

Protein attributes

Sequence length	555 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADJ63777.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8IUB5 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 7ADEBE85C8B667CD	FASTA	555	61,572
	10 20 30 40 50 60 MREFSRLYGE LDATTSTTRK LAALEDYFGR ADPADAAWAV YFLAGGKPRQ AVPTSLLKQC 70 80 90 100 110 120 AMEYAQIDEW LFEECYQSVG DLAETIAHIL PPASGSNPLG LARWVEERIA PLRGAAPETI 130 140 150 160 170 180 RAALFQAWDE LDWQGRFLLS KLIGGGFRVG VSRLLVTRAL AAVAQLDAKL VAQRMVGWTD 190 200 210 220 230 240 GRARPDAERF ARLIAPADSA DQPLQGGQPY PFFLAHPLMD APATLGPIQQ WQVEWKYDGI 250 260 270 280 290 300 RAQLVRRHGQ NWLWSRGEEL ITERFPELAA LPLPDGTVID GEIVIRHPDA GLAAERVAPF 310 320 330 340 350 360 SELQKRIGRK NLSARLLAEL PAGLIAYDLL EQDGCDLRGL PQSERRRRLE ALVGSHPAAA 370 380 390 400 410 420 LMLAPTLTAK DWDALAQLRA SARERGVEGM MLKDIDARYG IGRTRNDGTW WKWKIDPYSI 430 440 450 460 470 480 DAVLIYAQAG HGRRASLYTD YTFALWDGPP EAGSQRKLVP FAKAYSGLTD AEIAVVDQVI 490 500 510 520 530 540 RKSTIEKFGP VRSVQPSMVF EIGFEGIALS SRHKAGMAVR FPRILRQRLD KTVEQADTLA 550 TLRALLPPSP QPEQR

References

[1]

"The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria." Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R. , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SmR1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002039 Genomic DNA. Translation: ADJ63777.1.
RefSeq	YP_003775685.1. NC_014323.1.
3D structure databases
ProteinModelPortal	D8IUB5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ63777; ADJ63777; Hsero_2278.
GeneID	9402879.
KEGG	hse:Hsero_2278.
PATRIC	42363323. VBIHerSer153339_2310.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8IUB5_HERSS

Accession

Primary (citable) accession number: D8IUB5

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)