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D8IUA8

- D8IUA8_HERSS

UniProt

D8IUA8 - D8IUA8_HERSS

Protein
Submitted name:

ATP-dependent DNA ligase protein

Gene

Hsero_2271

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciHSER757424:GCTT-2271-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Hsero_2271Imported
    OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
    Taxonomic identifieri757424 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
    ProteomesiUP000000329: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8IUA8-1 [UniParc]FASTAAdd to Basket

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    MSTGKLDRYR AKRDFTITPE PSGHASRSRA GAQSQSLQFF IQRHHARRLH    50
    YDFRLELDGV LKSWAVPKGP SLDPHDKRLA VRVEDHPFDY GSFEGDIPAH 100
    QYGAGHVVLW DRGQWRPHGD ARAGLAKGHL SFELEGEKLH GRWALVRMGK 150
    PAADGKENWL LIKDDDAAAA SGEQAAITEL RPESVKDLGD QAPLAKARAS 200
    AKAAPDSTGP MPAQMQAQLA TLVDRAPAGE QWLCELKFDG YRGLCRIDHG 250
    QAAIYTREGL DWSHRWPILV QALARLPVDE AWIDGEVVAL DAQGQISFEA 300
    LQNLARGDRQ QADGIRLALY AFDLLYLNGH DLRDIPLRQR KALLRELIPG 350
    SDPEGLLLYS EHIEGHAAEV FRHACQHGME GIVLKRADAP YTGRRDRYWL 400
    KLKCEHRQEF VIAGYTEPAG QRSGFGAILV GVYDEHEQLR YAGRVGTGFD 450
    DKLLETLLKQ FGPLEQDQPA FANPPTGQQR RGVHWLRPAL VAEVRFAQWT 500
    SAGILRHGSF VALREDKDPH QIRREGPQPL AEAKADAKAP AAAPARSRGK 550
    ASDLSAPVTV AGVKLTHPGK ILFPDTGLTK LELARYYQSV APWILPELRQ 600
    RPLSLVRCPD GHAGKRFFQK HTGQGMPEAI DTIEVPEGEG HAQYMMVNDV 650
    AGLVATVQMG VLELHAWGAT GAALNHPDRV VFDLDPADDV PWATVVEGAQ 700
    LVRGLLKEIG LDCFLKTSGG KGLHVMVPIR PEHDWAVVKD WAHRFAAHLA 750
    RHLPDRFIAK MSKAARNGKI FIDYLRNAPG ATTVVAYSVR ARDGAPVSVP 800
    ITWEELEQGK GIKADHFRVS TMPARIRSLE QHDPWAHFGQ APQRLTKAML 850
    AAFDSV 856
    Length:856
    Mass (Da):94,782
    Last modified:October 5, 2010 - v1
    Checksum:iF91F6A3EB43982E0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ63770.1.
    RefSeqiWP_013234249.1. NC_014323.1.
    YP_003775678.1. NC_014323.1.

    Genome annotation databases

    EnsemblBacteriaiADJ63770; ADJ63770; Hsero_2271.
    GeneIDi9402872.
    KEGGihse:Hsero_2271.
    PATRICi42363309. VBIHerSer153339_2303.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002039 Genomic DNA. Translation: ADJ63770.1 .
    RefSeqi WP_013234249.1. NC_014323.1.
    YP_003775678.1. NC_014323.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ63770 ; ADJ63770 ; Hsero_2271 .
    GeneIDi 9402872.
    KEGGi hse:Hsero_2271.
    PATRICi 42363309. VBIHerSer153339_2303.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci HSER757424:GCTT-2271-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
      Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
      , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SmR1Imported.

    Entry informationi

    Entry nameiD8IUA8_HERSS
    AccessioniPrimary (citable) accession number: D8IUA8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3