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Protein
Submitted name:

ATP-dependent DNA ligase protein

Gene

Hsero_2271

Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2271-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Hsero_2271Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IUA8-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSTGKLDRYR AKRDFTITPE PSGHASRSRA GAQSQSLQFF IQRHHARRLH
60 70 80 90 100
YDFRLELDGV LKSWAVPKGP SLDPHDKRLA VRVEDHPFDY GSFEGDIPAH
110 120 130 140 150
QYGAGHVVLW DRGQWRPHGD ARAGLAKGHL SFELEGEKLH GRWALVRMGK
160 170 180 190 200
PAADGKENWL LIKDDDAAAA SGEQAAITEL RPESVKDLGD QAPLAKARAS
210 220 230 240 250
AKAAPDSTGP MPAQMQAQLA TLVDRAPAGE QWLCELKFDG YRGLCRIDHG
260 270 280 290 300
QAAIYTREGL DWSHRWPILV QALARLPVDE AWIDGEVVAL DAQGQISFEA
310 320 330 340 350
LQNLARGDRQ QADGIRLALY AFDLLYLNGH DLRDIPLRQR KALLRELIPG
360 370 380 390 400
SDPEGLLLYS EHIEGHAAEV FRHACQHGME GIVLKRADAP YTGRRDRYWL
410 420 430 440 450
KLKCEHRQEF VIAGYTEPAG QRSGFGAILV GVYDEHEQLR YAGRVGTGFD
460 470 480 490 500
DKLLETLLKQ FGPLEQDQPA FANPPTGQQR RGVHWLRPAL VAEVRFAQWT
510 520 530 540 550
SAGILRHGSF VALREDKDPH QIRREGPQPL AEAKADAKAP AAAPARSRGK
560 570 580 590 600
ASDLSAPVTV AGVKLTHPGK ILFPDTGLTK LELARYYQSV APWILPELRQ
610 620 630 640 650
RPLSLVRCPD GHAGKRFFQK HTGQGMPEAI DTIEVPEGEG HAQYMMVNDV
660 670 680 690 700
AGLVATVQMG VLELHAWGAT GAALNHPDRV VFDLDPADDV PWATVVEGAQ
710 720 730 740 750
LVRGLLKEIG LDCFLKTSGG KGLHVMVPIR PEHDWAVVKD WAHRFAAHLA
760 770 780 790 800
RHLPDRFIAK MSKAARNGKI FIDYLRNAPG ATTVVAYSVR ARDGAPVSVP
810 820 830 840 850
ITWEELEQGK GIKADHFRVS TMPARIRSLE QHDPWAHFGQ APQRLTKAML

AAFDSV
Length:856
Mass (Da):94,782
Last modified:October 5, 2010 - v1
Checksum:iF91F6A3EB43982E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ63770.1.
RefSeqiYP_003775678.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ63770; ADJ63770; Hsero_2271.
GeneIDi9402872.
KEGGihse:Hsero_2271.
PATRICi42363309. VBIHerSer153339_2303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002039 Genomic DNA. Translation: ADJ63770.1.
RefSeqiYP_003775678.1. NC_014323.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADJ63770; ADJ63770; Hsero_2271.
GeneIDi9402872.
KEGGihse:Hsero_2271.
PATRICi42363309. VBIHerSer153339_2303.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2271-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IUA8_HERSS
AccessioniPrimary (citable) accession number: D8IUA8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: January 7, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.