D8IUA8 (D8IUA8_HERSS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase protein EMBL ADJ63770.1
EC=6.5.1.1 EMBL ADJ63770.1

Gene names

Ordered Locus Names:

Hsero_2271

Organism

Herbaspirillum seropedicae (strain SmR1) [Complete proteome] [HAMAP] EMBL ADJ63770.1

Taxonomic identifier

757424 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Oxalobacteraceae › Herbaspirillum › Herbaspirillum seropedicae

Protein attributes

Sequence length	856 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADJ63770.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8IUA8 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: F91F6A3EB43982E0	FASTA	856	94,782
	10 20 30 40 50 60 MSTGKLDRYR AKRDFTITPE PSGHASRSRA GAQSQSLQFF IQRHHARRLH YDFRLELDGV 70 80 90 100 110 120 LKSWAVPKGP SLDPHDKRLA VRVEDHPFDY GSFEGDIPAH QYGAGHVVLW DRGQWRPHGD 130 140 150 160 170 180 ARAGLAKGHL SFELEGEKLH GRWALVRMGK PAADGKENWL LIKDDDAAAA SGEQAAITEL 190 200 210 220 230 240 RPESVKDLGD QAPLAKARAS AKAAPDSTGP MPAQMQAQLA TLVDRAPAGE QWLCELKFDG 250 260 270 280 290 300 YRGLCRIDHG QAAIYTREGL DWSHRWPILV QALARLPVDE AWIDGEVVAL DAQGQISFEA 310 320 330 340 350 360 LQNLARGDRQ QADGIRLALY AFDLLYLNGH DLRDIPLRQR KALLRELIPG SDPEGLLLYS 370 380 390 400 410 420 EHIEGHAAEV FRHACQHGME GIVLKRADAP YTGRRDRYWL KLKCEHRQEF VIAGYTEPAG 430 440 450 460 470 480 QRSGFGAILV GVYDEHEQLR YAGRVGTGFD DKLLETLLKQ FGPLEQDQPA FANPPTGQQR 490 500 510 520 530 540 RGVHWLRPAL VAEVRFAQWT SAGILRHGSF VALREDKDPH QIRREGPQPL AEAKADAKAP 550 560 570 580 590 600 AAAPARSRGK ASDLSAPVTV AGVKLTHPGK ILFPDTGLTK LELARYYQSV APWILPELRQ 610 620 630 640 650 660 RPLSLVRCPD GHAGKRFFQK HTGQGMPEAI DTIEVPEGEG HAQYMMVNDV AGLVATVQMG 670 680 690 700 710 720 VLELHAWGAT GAALNHPDRV VFDLDPADDV PWATVVEGAQ LVRGLLKEIG LDCFLKTSGG 730 740 750 760 770 780 KGLHVMVPIR PEHDWAVVKD WAHRFAAHLA RHLPDRFIAK MSKAARNGKI FIDYLRNAPG 790 800 810 820 830 840 ATTVVAYSVR ARDGAPVSVP ITWEELEQGK GIKADHFRVS TMPARIRSLE QHDPWAHFGQ 850 APQRLTKAML AAFDSV

References

[1]

"The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria." Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R. , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SmR1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002039 Genomic DNA. Translation: ADJ63770.1.
RefSeq	YP_003775678.1. NC_014323.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ63770; ADJ63770; Hsero_2271.
GeneID	9402872.
KEGG	hse:Hsero_2271.
PATRIC	42363309. VBIHerSer153339_2303.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8IUA8_HERSS

Accession

Primary (citable) accession number: D8IUA8

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)