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D8IUA8

- D8IUA8_HERSS

UniProt

D8IUA8 - D8IUA8_HERSS

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Protein
Submitted name: ATP-dependent DNA ligase protein
Gene
Hsero_2271
Organism
Herbaspirillum seropedicae (strain SmR1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSER757424:GCTT-2271-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Hsero_2271Imported
OrganismiHerbaspirillum seropedicae (strain SmR1)Imported
Taxonomic identifieri757424 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum
ProteomesiUP000000329: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8IUA8-1 [UniParc]FASTAAdd to Basket

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MSTGKLDRYR AKRDFTITPE PSGHASRSRA GAQSQSLQFF IQRHHARRLH    50
YDFRLELDGV LKSWAVPKGP SLDPHDKRLA VRVEDHPFDY GSFEGDIPAH 100
QYGAGHVVLW DRGQWRPHGD ARAGLAKGHL SFELEGEKLH GRWALVRMGK 150
PAADGKENWL LIKDDDAAAA SGEQAAITEL RPESVKDLGD QAPLAKARAS 200
AKAAPDSTGP MPAQMQAQLA TLVDRAPAGE QWLCELKFDG YRGLCRIDHG 250
QAAIYTREGL DWSHRWPILV QALARLPVDE AWIDGEVVAL DAQGQISFEA 300
LQNLARGDRQ QADGIRLALY AFDLLYLNGH DLRDIPLRQR KALLRELIPG 350
SDPEGLLLYS EHIEGHAAEV FRHACQHGME GIVLKRADAP YTGRRDRYWL 400
KLKCEHRQEF VIAGYTEPAG QRSGFGAILV GVYDEHEQLR YAGRVGTGFD 450
DKLLETLLKQ FGPLEQDQPA FANPPTGQQR RGVHWLRPAL VAEVRFAQWT 500
SAGILRHGSF VALREDKDPH QIRREGPQPL AEAKADAKAP AAAPARSRGK 550
ASDLSAPVTV AGVKLTHPGK ILFPDTGLTK LELARYYQSV APWILPELRQ 600
RPLSLVRCPD GHAGKRFFQK HTGQGMPEAI DTIEVPEGEG HAQYMMVNDV 650
AGLVATVQMG VLELHAWGAT GAALNHPDRV VFDLDPADDV PWATVVEGAQ 700
LVRGLLKEIG LDCFLKTSGG KGLHVMVPIR PEHDWAVVKD WAHRFAAHLA 750
RHLPDRFIAK MSKAARNGKI FIDYLRNAPG ATTVVAYSVR ARDGAPVSVP 800
ITWEELEQGK GIKADHFRVS TMPARIRSLE QHDPWAHFGQ APQRLTKAML 850
AAFDSV 856
Length:856
Mass (Da):94,782
Last modified:October 5, 2010 - v1
Checksum:iF91F6A3EB43982E0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002039 Genomic DNA. Translation: ADJ63770.1.
RefSeqiWP_013234249.1. NC_014323.1.
YP_003775678.1. NC_014323.1.

Genome annotation databases

EnsemblBacteriaiADJ63770; ADJ63770; Hsero_2271.
GeneIDi9402872.
KEGGihse:Hsero_2271.
PATRICi42363309. VBIHerSer153339_2303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002039 Genomic DNA. Translation: ADJ63770.1 .
RefSeqi WP_013234249.1. NC_014323.1.
YP_003775678.1. NC_014323.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ63770 ; ADJ63770 ; Hsero_2271 .
GeneIDi 9402872.
KEGGi hse:Hsero_2271.
PATRICi 42363309. VBIHerSer153339_2303.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.

Enzyme and pathway databases

BioCyci HSER757424:GCTT-2271-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Herbaspirillum seropedicae SmR1, an endophytic, nitrogen-fixing, plant-growth promoting beta-Proteobacteria."
    Pedrosa F.O., Monteiro R.A., Wassem R., Cruz L.M., Ayub R.A., Colauto N.B., Fernandez M.A., Fungaro M.H.P., Grisard E.C., Hungria M., Madeira H.M.F., Nodari R.O., Osaku C.A., Petzl-Erler M.L., Terenzi H., Vieira L.G.E., Almeida M.I.M., Alves L.R.
    , Arantes O.M.N., Balsanelli E., Barcellos F.G., Baura V.A., Binde D.R., Campo R.J., Chubatsu L.S., Chueire L.M.O., Ciferri R.R., Correa L.C., da Conceicao Silva J.L., Dabul A.N.G., Dambros B.P., Faoro H., Favetti A., Friedermann G., Furlaneto M.C., Gasques L.S., Gimenes C.C.T., Gioppo N.M.R., Glienke-Blanco C., Godoy L.P., Guerra M.P., Karp S., Kava-Cordeiro V., Margarido V.P., Mathioni S.M., Menck-Soares M.A., Murace N.K., Nicolas M.F., Oliveira C.E.C., Pagnan N.A.B., Pamphile J.A., Patussi E.V., Pereira L.F.P., Pereira-Ferrari L., Pinto F.G.S., Precoma C., Prioli A.J., Prioli S.M.A.P., Raittz R.T., Ramos H.J.O., Ribeiro E.M.S.F., Rigo L.U., Rocha C.L.M.S.C., Rocha S.N., Santos K., Satori D., Silva A.G., Simao R.C.G., Soares M.A.M., Souza E.M., Steffens M.B.R., Steindel M., Tadra-Sfeir M.Z., Takahashi E.K., Torres R.A., Valle J.S., Vernal J.I., Vilas-Boas L.A., Watanabe M.A.E., Weiss V.A., Yates M.A., Souza E.M.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SmR1Imported.

Entry informationi

Entry nameiD8IUA8_HERSS
AccessioniPrimary (citable) accession number: D8IUA8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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