Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D8IUA8 (D8IUA8_HERSS) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=6.5.1.1 EMBL ADJ63770.1
Gene names
Ordered Locus Names:Hsero_2271 EMBL ADJ63770.1
OrganismHerbaspirillum seropedicae (strain SmR1) [Complete proteome] [HAMAP] EMBL ADJ63770.1
Taxonomic identifier757424 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum

Protein attributes

Sequence length856 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D8IUA8 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: F91F6A3EB43982E0

FASTA85694,782
        10         20         30         40         50         60 
MSTGKLDRYR AKRDFTITPE PSGHASRSRA GAQSQSLQFF IQRHHARRLH YDFRLELDGV 

        70         80         90        100        110        120 
LKSWAVPKGP SLDPHDKRLA VRVEDHPFDY GSFEGDIPAH QYGAGHVVLW DRGQWRPHGD 

       130        140        150        160        170        180 
ARAGLAKGHL SFELEGEKLH GRWALVRMGK PAADGKENWL LIKDDDAAAA SGEQAAITEL 

       190        200        210        220        230        240 
RPESVKDLGD QAPLAKARAS AKAAPDSTGP MPAQMQAQLA TLVDRAPAGE QWLCELKFDG 

       250        260        270        280        290        300 
YRGLCRIDHG QAAIYTREGL DWSHRWPILV QALARLPVDE AWIDGEVVAL DAQGQISFEA 

       310        320        330        340        350        360 
LQNLARGDRQ QADGIRLALY AFDLLYLNGH DLRDIPLRQR KALLRELIPG SDPEGLLLYS 

       370        380        390        400        410        420 
EHIEGHAAEV FRHACQHGME GIVLKRADAP YTGRRDRYWL KLKCEHRQEF VIAGYTEPAG 

       430        440        450        460        470        480 
QRSGFGAILV GVYDEHEQLR YAGRVGTGFD DKLLETLLKQ FGPLEQDQPA FANPPTGQQR 

       490        500        510        520        530        540 
RGVHWLRPAL VAEVRFAQWT SAGILRHGSF VALREDKDPH QIRREGPQPL AEAKADAKAP 

       550        560        570        580        590        600 
AAAPARSRGK ASDLSAPVTV AGVKLTHPGK ILFPDTGLTK LELARYYQSV APWILPELRQ 

       610        620        630        640        650        660 
RPLSLVRCPD GHAGKRFFQK HTGQGMPEAI DTIEVPEGEG HAQYMMVNDV AGLVATVQMG 

       670        680        690        700        710        720 
VLELHAWGAT GAALNHPDRV VFDLDPADDV PWATVVEGAQ LVRGLLKEIG LDCFLKTSGG 

       730        740        750        760        770        780 
KGLHVMVPIR PEHDWAVVKD WAHRFAAHLA RHLPDRFIAK MSKAARNGKI FIDYLRNAPG 

       790        800        810        820        830        840 
ATTVVAYSVR ARDGAPVSVP ITWEELEQGK GIKADHFRVS TMPARIRSLE QHDPWAHFGQ 

       850 
APQRLTKAML AAFDSV 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002039 Genomic DNA. Translation: ADJ63770.1.
RefSeqYP_003775678.1. NC_014323.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ63770; ADJ63770; Hsero_2271.
GeneID9402872.
KEGGhse:Hsero_2271.
PATRIC42363309. VBIHerSer153339_2303.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycHSER757424:GCTT-2271-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8IUA8_HERSS
AccessionPrimary (citable) accession number: D8IUA8
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)