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D8ITY3 (D8ITY3_HERSS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufB EMBL ADJ61624.1
Synonyms:tuf HAMAP-Rule MF_00118
Ordered Locus Names:Hsero_0097 EMBL ADJ61624.1, Hsero_0112 EMBL ADJ61638.1
OrganismHerbaspirillum seropedicae (strain SmR1) [Complete proteome] [HAMAP] EMBL ADJ61624.1
Taxonomic identifier757424 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeHerbaspirillum

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D8ITY3 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 6D06D4DBDCB2BEF3

FASTA39643,015
        10         20         30         40         50         60 
MAKGKFERTK PHVNVGTIGH VDHGKTTLTA AIATVLSKKF GGEAKAYDQI DAAPEEKARG 

        70         80         90        100        110        120 
ITINTAHVEY ETANRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPY IIVFLNKADM VDDAELLELV EMEVRELLSK YEFPGDDLPI VKGSAKLALE 

       190        200        210        220        230        240 
GDTGPLGEQA IMALAEALDT YIPTPERAVD GTFLMPVEDV FSISGRGTVV TGRVERGIIK 

       250        260        270        280        290        300 
VGEEIEIVGI ADTQKTTCTG VEMFRKLLDQ GQAGDNVGVL LRGTKREDVQ RGQVLAKPGS 

       310        320        330        340        350        360 
IKPHKHFTGE IYVLSKDEGG RHTPFFNNYR PQFYFRTTDV TGAIELPKDK EMVMPGDNVS 

       370        380        390 
ITVQLINPIA MEEGLRFAIR EGGRTVGAGV VAKIFD 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002039 Genomic DNA. Translation: ADJ61624.1.
CP002039 Genomic DNA. Translation: ADJ61638.1.
RefSeqYP_003773532.1. NC_014323.1.
YP_003773546.1. NC_014323.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ61624; ADJ61624; Hsero_0097.
ADJ61638; ADJ61638; Hsero_0112.
GeneID9400698.
9400713.
KEGGhse:Hsero_0097.
hse:Hsero_0112.
PATRIC42358847. VBIHerSer153339_0099.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.

Enzyme and pathway databases

BioCycHSER757424:GCTT-112-MONOMER.
HSER757424:GCTT-97-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8ITY3_HERSS
AccessionPrimary (citable) accession number: D8ITY3
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)