D8IL08 (D8IL08_LACSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

HN6_00683 EMBL ADJ78960.1

Organism

Lactobacillus salivarius (strain CECT 5713) [Complete proteome] [HAMAP] EMBL ADJ78960.1

Taxonomic identifier

712961 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Lactobacillales › Lactobacillaceae › Lactobacillus › Lactobacillus salivarius

Protein attributes

Sequence length	298 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 EMBL ADJ78960.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8IL08 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 6081575ABB4E8F2B	FASTA	298	33,668
	10 20 30 40 50 60 MSDYKVLADK TGRLDKVVTN IFTDYTRSQL KKMIDDGNIK VNGDVKKANY KVNLGDEITF 70 80 90 100 110 120 DKPEVKKLSL EPENIPLDIV YEDDDVIVVN KPQGMVVHPS PGHFEHTLVN ALLYHSPLST 130 140 150 160 170 180 INGTYRPGIV HRIDKDTSGL LMVAKNDMAH QSLAKQLKDK TNTREYVALV HGNIKEDSGT 190 200 210 220 230 240 IDAPLGRSKV DRKKQAVVKD GRNAVTHFEV LKRYGDYTLV KCVLETGRTH QIRVHMKYIG 250 260 270 280 290 HPLVGDQLYG PRKTLGNSGQ FLHAEKLGFV HPRTNEYLEF TAPLPENFKK LLESLDKR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Lactobacillus salivarius CECT 5713, a probiotic strain isolated from human milk and infant feces." Jimenez E., Martin R., Maldonado A., Martin V., Gomez de Segura A., Fernandez L., Rodriguez J.M. J. Bacteriol. 192:5266-5267(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CECT 5713 EMBL ADJ78960.1.
[2]	"Complete Genome Sequence of Lactobacillus salivarius CECT 5713, a probiotic strain isolated from human milk and infant feces." Jimenez E., Martin R., Maldonado A., Martin V., Fernandez L., Rodriguez J.M. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: CECT 5713.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002034 Genomic DNA. Translation: ADJ78960.1.
RefSeq	YP_005863747.1. NC_017481.1.
3D structure databases
ProteinModelPortal	D8IL08.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ78960; ADJ78960; HN6_00683.
GeneID	12472283.
KEGG	lsi:HN6_00683.
PATRIC	43090620. VBILacSal150030_0542.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K06180.
OMA	KTIPAQT.
Enzyme and pathway databases
BioCyc	LSAL712961:GLFC-681-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D8IL08_LACSC

Accession

Primary (citable) accession number: D8IL08

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 29, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)