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D8I8R1 (D8I8R1_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000716
Gene names
Name:rpoE EMBL ADJ45399.1
Ordered Locus Names:AMED_3616
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ45399.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis ›

Protein attributes

Sequence length317 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Sequences

Sequence LengthMass (Da)Tools
D8I8R1 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 8F7AEAD7102713B3

FASTA31735,363
        10         20         30         40         50         60 
MTETENGNED FGRLSEPFRR ELLAYCYRVL GSIDEAEEVV QDVYLDAWRA YGGFEGRSSL 

        70         80         90        100        110        120 
RTWLYRIATR ACFKALEKSR RRPLPADLGA PEARPEARLV EPTSEVPWLQ PAPDLLFATT 

       130        140        150        160        170        180 
PADPATVVVQ RHTMRLALIG ALQQLPPRQR AVLILRDVLQ WRTAEVAELL EMTTAAVNSA 

       190        200        210        220        230        240 
LQRARAQVPL EEDDLTEPAE PRQRALLDRY VTAFETADVD QLVAVLTQDA RWEMPPISTW 

       250        260        270        280        290        300 
FEGRDTILAF LARQMPIIGP AELVATAANG QPAFAVYARG HDGARRPHAL HVLTMTAEGV 

       310 
SRIVAFHGSA LFPLFGL

« Hide

References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002000 Genomic DNA. Translation: ADJ45399.1.
RefSeqYP_003765801.1. NC_014318.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ45399; ADJ45399; AMED_3616.
GeneID9437811.
KEGGamd:AMED_3616.
PATRIC42154376. VBIAmyMed151214_3735.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000220479.
KOK03088.

Enzyme and pathway databases

BioCycAMED749927:GCZN-3602-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR009959. Cyclase_SnoaL-like_dom.
IPR014284. RNA_pol_sigma-70_dom.
IPR014305. RNA_pol_sigma-G_actinobac.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
PF12680. SnoaL_2. 1 hit.
[Graphical view]
SUPFAMSSF88946. Sigma_r2. 1 hit.
SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMsTIGR02937. sigma70-ECF. 1 hit.
TIGR02960. SigX5. 1 hit.
PROSITEPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8I8R1_AMYMU
AccessionPrimary (citable) accession number: D8I8R1
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 29, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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