Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D8I8R1

- D8I8R1_AMYMU

UniProt

D8I8R1 - D8I8R1_AMYMU

Protein

RNA polymerase sigma factor

Gene

rpoE

Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciAMED749927:GCZN-3602-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA polymerase sigma factorUniRule annotation
    Gene namesi
    Name:rpoEImported
    Ordered Locus Names:AMED_3616Imported
    OrganismiAmycolatopsis mediterranei (strain U-32)Imported
    Taxonomic identifieri749927 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000000328: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000220479.
    KOiK03088.
    OMAiMTETENG.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR009959. Cyclase_SnoaL-like_dom.
    IPR014284. RNA_pol_sigma-70_dom.
    IPR014305. RNA_pol_sigma-G_actinobac.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    PF12680. SnoaL_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
    TIGR02960. SigX5. 1 hit.
    PROSITEiPS01063. SIGMA70_ECF. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8I8R1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTETENGNED FGRLSEPFRR ELLAYCYRVL GSIDEAEEVV QDVYLDAWRA    50
    YGGFEGRSSL RTWLYRIATR ACFKALEKSR RRPLPADLGA PEARPEARLV 100
    EPTSEVPWLQ PAPDLLFATT PADPATVVVQ RHTMRLALIG ALQQLPPRQR 150
    AVLILRDVLQ WRTAEVAELL EMTTAAVNSA LQRARAQVPL EEDDLTEPAE 200
    PRQRALLDRY VTAFETADVD QLVAVLTQDA RWEMPPISTW FEGRDTILAF 250
    LARQMPIIGP AELVATAANG QPAFAVYARG HDGARRPHAL HVLTMTAEGV 300
    SRIVAFHGSA LFPLFGL 317
    Length:317
    Mass (Da):35,363
    Last modified:October 5, 2010 - v1
    Checksum:i8F7AEAD7102713B3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ45399.1.
    RefSeqiWP_013225471.1. NC_014318.1.
    YP_003765801.1. NC_014318.1.

    Genome annotation databases

    EnsemblBacteriaiADJ45399; ADJ45399; AMED_3616.
    GeneIDi9437811.
    KEGGiamd:AMED_3616.
    PATRICi42154376. VBIAmyMed151214_3735.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ45399.1 .
    RefSeqi WP_013225471.1. NC_014318.1.
    YP_003765801.1. NC_014318.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ45399 ; ADJ45399 ; AMED_3616 .
    GeneIDi 9437811.
    KEGGi amd:AMED_3616.
    PATRICi 42154376. VBIAmyMed151214_3735.

    Phylogenomic databases

    HOGENOMi HOG000220479.
    KOi K03088.
    OMAi MTETENG.

    Enzyme and pathway databases

    BioCyci AMED749927:GCZN-3602-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR009959. Cyclase_SnoaL-like_dom.
    IPR014284. RNA_pol_sigma-70_dom.
    IPR014305. RNA_pol_sigma-G_actinobac.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    PF12680. SnoaL_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    TIGR02960. SigX5. 1 hit.
    PROSITEi PS01063. SIGMA70_ECF. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
      Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
      , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
      Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: U-32Imported.

    Entry informationi

    Entry nameiD8I8R1_AMYMU
    AccessioniPrimary (citable) accession number: D8I8R1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3