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D8I5U0 (D8I5U0_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:AMED_3393 EMBL ADJ45179.1
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ45179.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis

Protein attributes

Sequence length640 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D8I5U0 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 3CE43A2125F71880

FASTA64069,749
        10         20         30         40         50         60 
MDVRTDRQAE QEQAAAARAA ERTGPRQAKI ALLRKPGGIA EADEPSRIAT RIDRLGRYYP 

        70         80         90        100        110        120 
DIRPVSPAAI AAGDPAAMTA AGAILERIVL TNDLLGVGYL EGGVAASAAV GRVNIRNAQG 

       130        140        150        160        170        180 
RLIGYGTGSL VSPELLLTNH HVLPDAEAAG FSVIEFDYQD GIDGLPRPVR AFTLDPDRFF 

       190        200        210        220        230        240 
AADQELDFAL VAVKATADEL RPFGFNRLIA SEGKAIVGDF VTIVQHPGGG KKQIALRENR 

       250        260        270        280        290        300 
VVDVLEEFLH YETDTEPGSS GSPVFNDQWE VVALHHASVP AAGHAEYGGF LNEGIRVSKL 

       310        320        330        340        350        360 
LKFLREQKFA PAQQALLDRL ATRPERAQPA ADGAAPVLTL SMPFDIRLRA EAATGRIDPD 

       370        380        390        400        410        420 
YSNREGYDPA FLPGHTVPLP GLPDALAGLA AINRQARGEP KYVLPYHHFS VVMHRERRLA 

       430        440        450        460        470        480 
MFTAVNIDGR TSRSLRREAD HWSLDPRVAV TEQIGEEIYR DNPLDRGHLV RRLDPAWGAT 

       490        500        510        520        530        540 
EAIAQLGNDD TFHFTNCSPQ HKDFNQNKTT WAGLEDYILT NADNFDLKVT VVTGPVLAPD 

       550        560        570        580        590        600 
DDQYRGVQLP RQFWKVVAMV KTGGALSATA YLLSQEELIH GLEAATEFDY GAYRTYQVPV 

       610        620        630        640 
RRIAELTGLS FGDLEAADPL AGLESTSVAQ EIRTVADLVL 

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References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002000 Genomic DNA. Translation: ADJ45179.1.
RefSeqYP_003765581.1. NC_014318.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ45179; ADJ45179; AMED_3393.
GeneID9437589.
KEGGamd:AMED_3393.
PATRIC42153910. VBIAmyMed151214_3504.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000274111.
KOK01173.
OMATNCSPQH.

Enzyme and pathway databases

BioCycAMED749927:GCZN-3380-MONOMER.

Family and domain databases

Gene3D3.40.570.10. 1 hit.
InterProIPR001604. DNA/RNA_non-sp_Endonuclease.
IPR020821. Extracellular_endonuc_su_A.
IPR009003. Trypsin-like_Pept_dom.
[Graphical view]
PfamPF01223. Endonuclease_NS. 1 hit.
[Graphical view]
SMARTSM00892. Endonuclease_NS. 1 hit.
SM00477. NUC. 1 hit.
[Graphical view]
SUPFAMSSF50494. SSF50494. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8I5U0_AMYMU
AccessionPrimary (citable) accession number: D8I5U0
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)