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D8I4A4 (D8I4A4_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase EMBL ADJ45045.1
Gene names
Name:lig EMBL ADJ45045.1
Ordered Locus Names:AMED_3255
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ45045.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis ›

Protein attributes

Sequence length670 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADJ45045.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8I4A4 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: D27A67A8BFE8E1AA

FASTA67073,532
        10         20         30         40         50         60 
MAADDASLVP AWLEPMLAKA DGGRLRTGPE WAYEYKLDGY RAAMRIAPDG TTVLTSRNNI 

        70         80         90        100        110        120 
DFTAEFTDLE GVLAPALDGR AAYLDGEIVV YGEDGRIDFE RMQERRGRYV RHQSGPKGRE 

       130        140        150        160        170        180 
FTDVPVRFLA FDLLRLGDES LLAMPYDERR RLLAELPMPD PYRVSVVRAV TFDELAADRR 

       190        200        210        220        230        240 
TPADFLAHAA SAGYEGVVAK LRSSAYHPGQ RPDSWLKHPL VRTQEVIVCG WRPGQNSFTG 

       250        260        270        280        290        300 
TLGGLLLGAH DPATGDLVYI GDVGTGFSQA TRADLRAQLE AMERRTHPFV TTPPREDTAR 

       310        320        330        340        350        360 
ARWVEPRLVG EIVYRQFTRG GRVRHTAWRG LRHDKDPAEV LAPRAVPHEP AGAAPAPPSP 

       370        380        390        400        410        420 
SSSASASASP SPEPAGQRIT VQAGDRRLTL SNLDKVLYPA DGFTKGEVIN YYSRVAAVLL 

       430        440        450        460        470        480 
PHLAGRPVTF IRYPNGVDGQ KWFEKNAPKG APDWLRTVRL AGTGGTIDYP LLDDLPGLVW 

       490        500        510        520        530        540 
AANMAALELH VPQWTVEQGT RQPPDRLVFD LDPGPGTTIV DCCRVAERLH DVLVADGLTP 

       550        560        570        580        590        600 
YAKTSGSKGM QLYCGIRTDD PAAPSAYAKR LAQRLAKETP ESVTAVMAKA QRTGRVFIDW 

       610        620        630        640        650        660 
SQNNPAKTTV APYSLRGRDH PTASTPVTWD EVRACRHVNR LTFTADDVLD RLEDHGDLLA 

       670 
GLIEDRAPLG

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References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002000 Genomic DNA. Translation: ADJ45045.1.
RefSeqYP_003765447.1. NC_014318.1.

3D structure databases

ProteinModelPortalD8I4A4.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ45045; ADJ45045; AMED_3255.
GeneID9437455.
KEGGamd:AMED_3255.
PATRIC42153622. VBIAmyMed151214_3360.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8I4A4_AMYMU
AccessionPrimary (citable) accession number: D8I4A4
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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