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D8I4A4

- D8I4A4_AMYMU

UniProt

D8I4A4 - D8I4A4_AMYMU

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAMED749927:GCZN-3246-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMED_3255Imported
OrganismiAmycolatopsis mediterranei (strain U-32)Imported
Taxonomic identifieri749927 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000000328: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8I4A4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiAMERRTH.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8I4A4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAADDASLVP AWLEPMLAKA DGGRLRTGPE WAYEYKLDGY RAAMRIAPDG
60 70 80 90 100
TTVLTSRNNI DFTAEFTDLE GVLAPALDGR AAYLDGEIVV YGEDGRIDFE
110 120 130 140 150
RMQERRGRYV RHQSGPKGRE FTDVPVRFLA FDLLRLGDES LLAMPYDERR
160 170 180 190 200
RLLAELPMPD PYRVSVVRAV TFDELAADRR TPADFLAHAA SAGYEGVVAK
210 220 230 240 250
LRSSAYHPGQ RPDSWLKHPL VRTQEVIVCG WRPGQNSFTG TLGGLLLGAH
260 270 280 290 300
DPATGDLVYI GDVGTGFSQA TRADLRAQLE AMERRTHPFV TTPPREDTAR
310 320 330 340 350
ARWVEPRLVG EIVYRQFTRG GRVRHTAWRG LRHDKDPAEV LAPRAVPHEP
360 370 380 390 400
AGAAPAPPSP SSSASASASP SPEPAGQRIT VQAGDRRLTL SNLDKVLYPA
410 420 430 440 450
DGFTKGEVIN YYSRVAAVLL PHLAGRPVTF IRYPNGVDGQ KWFEKNAPKG
460 470 480 490 500
APDWLRTVRL AGTGGTIDYP LLDDLPGLVW AANMAALELH VPQWTVEQGT
510 520 530 540 550
RQPPDRLVFD LDPGPGTTIV DCCRVAERLH DVLVADGLTP YAKTSGSKGM
560 570 580 590 600
QLYCGIRTDD PAAPSAYAKR LAQRLAKETP ESVTAVMAKA QRTGRVFIDW
610 620 630 640 650
SQNNPAKTTV APYSLRGRDH PTASTPVTWD EVRACRHVNR LTFTADDVLD
660 670
RLEDHGDLLA GLIEDRAPLG
Length:670
Mass (Da):73,532
Last modified:October 5, 2010 - v1
Checksum:iD27A67A8BFE8E1AA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002000 Genomic DNA. Translation: ADJ45045.1.
RefSeqiYP_003765447.1. NC_014318.1.

Genome annotation databases

EnsemblBacteriaiADJ45045; ADJ45045; AMED_3255.
GeneIDi9437455.
KEGGiamd:AMED_3255.
PATRICi42153622. VBIAmyMed151214_3360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002000 Genomic DNA. Translation: ADJ45045.1 .
RefSeqi YP_003765447.1. NC_014318.1.

3D structure databases

ProteinModelPortali D8I4A4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ45045 ; ADJ45045 ; AMED_3255 .
GeneIDi 9437455.
KEGGi amd:AMED_3255.
PATRICi 42153622. VBIAmyMed151214_3360.

Phylogenomic databases

KOi K01971.
OMAi AMERRTH.

Enzyme and pathway databases

BioCyci AMED749927:GCZN-3246-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
    Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
    , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
    Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: U-32Imported.

Entry informationi

Entry nameiD8I4A4_AMYMU
AccessioniPrimary (citable) accession number: D8I4A4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 29, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3