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D8I312 (D8I312_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:lig EMBL ADJ47037.1
Ordered Locus Names:AMED_5275 EMBL ADJ47037.1
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ47037.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis

Protein attributes

Sequence length355 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADJ47037.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8I312 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: C174075ADF45C78E

FASTA35539,715
        10         20         30         40         50         60 
MADKLEEYRG KRARDRTSEP WPDGPPAPGD NDLFVIQEHH ATRLHWDFRL ERDGVLVSWA 

        70         80         90        100        110        120 
VPKGLPLSPG VPRLAVHTED HPMEYLTFSG EIPAGEYGGG RMTVWDTGKY ETLHWNDHKV 

       130        140        150        160        170        180 
EVVFHGERAR GKYLFTNRHD EDDRDWTLRR LDPAEPGHED APEFVEPMTA VPGELPADDD 

       190        200        210        220        230        240 
EWAYEFAWGG LRTMLLVCGG RVTAHDETGA DVTARYPELH KLGEQLGSTE VLLDGEVVVV 

       250        260        270        280        290        300 
KDGKPDPDGL DERRRADGAA AKRLKASCPV FYFASDVLHL EGRATLELPY TKRRELLDGL 

       310        320        330        340        350 
PIEDRHWQVP RYYLGGGEAV AGASRQHGLP GVVAKRADSP YQPGGGPGDW LLIRN 

« Hide

References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002000 Genomic DNA. Translation: ADJ47037.1.
RefSeqYP_003767439.1. NC_014318.1.

3D structure databases

ProteinModelPortalD8I312.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ47037; ADJ47037; AMED_5275.
GeneID9439451.
KEGGamd:AMED_5275.
PATRIC42157840. VBIAmyMed151214_5466.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMALAKHTED.

Enzyme and pathway databases

BioCycAMED749927:GCZN-5242-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8I312_AMYMU
AccessionPrimary (citable) accession number: D8I312
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)