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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAMED749927:GCZN-5242-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMED_5275Imported
OrganismiAmycolatopsis mediterranei (strain U-32)Imported
Taxonomic identifieri749927 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000000328 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD8I312.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLAKHTED.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

D8I312-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADKLEEYRG KRARDRTSEP WPDGPPAPGD NDLFVIQEHH ATRLHWDFRL
60 70 80 90 100
ERDGVLVSWA VPKGLPLSPG VPRLAVHTED HPMEYLTFSG EIPAGEYGGG
110 120 130 140 150
RMTVWDTGKY ETLHWNDHKV EVVFHGERAR GKYLFTNRHD EDDRDWTLRR
160 170 180 190 200
LDPAEPGHED APEFVEPMTA VPGELPADDD EWAYEFAWGG LRTMLLVCGG
210 220 230 240 250
RVTAHDETGA DVTARYPELH KLGEQLGSTE VLLDGEVVVV KDGKPDPDGL
260 270 280 290 300
DERRRADGAA AKRLKASCPV FYFASDVLHL EGRATLELPY TKRRELLDGL
310 320 330 340 350
PIEDRHWQVP RYYLGGGEAV AGASRQHGLP GVVAKRADSP YQPGGGPGDW

LLIRN
Length:355
Mass (Da):39,715
Last modified:October 5, 2010 - v1
Checksum:iC174075ADF45C78E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002000 Genomic DNA. Translation: ADJ47037.1.
RefSeqiYP_003767439.1. NC_014318.1.

Genome annotation databases

EnsemblBacteriaiADJ47037; ADJ47037; AMED_5275.
GeneIDi9439451.
KEGGiamd:AMED_5275.
PATRICi42157840. VBIAmyMed151214_5466.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002000 Genomic DNA. Translation: ADJ47037.1.
RefSeqiYP_003767439.1. NC_014318.1.

3D structure databases

ProteinModelPortaliD8I312.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADJ47037; ADJ47037; AMED_5275.
GeneIDi9439451.
KEGGiamd:AMED_5275.
PATRICi42157840. VBIAmyMed151214_5466.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLAKHTED.

Enzyme and pathway databases

BioCyciAMED749927:GCZN-5242-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
    Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
    , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
    Cell Res. 20:1096-1108(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: U-32Imported.

Entry informationi

Entry nameiD8I312_AMYMU
AccessioniPrimary (citable) accession number: D8I312
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: February 4, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.