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D8I1N5 (D8I1N5_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:lig EMBL ADJ46966.1
Ordered Locus Names:AMED_5203 EMBL ADJ46966.1
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ46966.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis

Protein attributes

Sequence length287 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADJ46966.1
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionligase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8I1N5 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: A6379CD8FD0973F5

FASTA28732,010
        10         20         30         40         50         60 
MKTSHPDKVF YPEDGLTKGD VVEYYRAVAD VMLPHLRGRP LTLRRFPDGI GKPGWFQKHP 

        70         80         90        100        110        120 
GEHFPDSIRV ERVPRRGGGT DEYVVCEDAA TLEYLANQGT VEFHVWLSTA DAPERPDRLV 

       130        140        150        160        170        180 
LDLDPPDGTP VTELRTVARR IRDHYERVGL TAFVQATGGR GFHVLAPLDA KSETDVVLEL 

       190        200        210        220        230        240 
SRALADRVAG DDPDRLTTAQ RKDQRGDRIF LDANRNGYAQ TFVAPYSLRA RPGAAAATPL 

       250        260        270        280 
DWRELGTADP AGWSLVKEKR RLARKEDPWR DLDEHAGSAE AALKQLG 

« Hide

References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002000 Genomic DNA. Translation: ADJ46966.1.
RefSeqYP_003767368.1. NC_014318.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ46966; ADJ46966; AMED_5203.
GeneID9439380.
KEGGamd:AMED_5203.
PATRIC42157686. VBIAmyMed151214_5389.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000244654.
KOK01971.
OMADIQRNAY.

Enzyme and pathway databases

BioCycAMED749927:GCZN-5171-MONOMER.

Family and domain databases

InterProIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8I1N5_AMYMU
AccessionPrimary (citable) accession number: D8I1N5
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)