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D8I1N5

- D8I1N5_AMYMU

UniProt

D8I1N5 - D8I1N5_AMYMU

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
lig, AMED_5203
Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAMED749927:GCZN-5171-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMED_5203Imported
OrganismiAmycolatopsis mediterranei (strain U-32)Imported
Taxonomic identifieri749927 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000000328: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiDIQRNAY.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

D8I1N5-1 [UniParc]FASTAAdd to Basket

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MKTSHPDKVF YPEDGLTKGD VVEYYRAVAD VMLPHLRGRP LTLRRFPDGI    50
GKPGWFQKHP GEHFPDSIRV ERVPRRGGGT DEYVVCEDAA TLEYLANQGT 100
VEFHVWLSTA DAPERPDRLV LDLDPPDGTP VTELRTVARR IRDHYERVGL 150
TAFVQATGGR GFHVLAPLDA KSETDVVLEL SRALADRVAG DDPDRLTTAQ 200
RKDQRGDRIF LDANRNGYAQ TFVAPYSLRA RPGAAAATPL DWRELGTADP 250
AGWSLVKEKR RLARKEDPWR DLDEHAGSAE AALKQLG 287
Length:287
Mass (Da):32,010
Last modified:October 5, 2010 - v1
Checksum:iA6379CD8FD0973F5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002000 Genomic DNA. Translation: ADJ46966.1.
RefSeqiYP_003767368.1. NC_014318.1.

Genome annotation databases

EnsemblBacteriaiADJ46966; ADJ46966; AMED_5203.
GeneIDi9439380.
KEGGiamd:AMED_5203.
PATRICi42157686. VBIAmyMed151214_5389.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002000 Genomic DNA. Translation: ADJ46966.1 .
RefSeqi YP_003767368.1. NC_014318.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADJ46966 ; ADJ46966 ; AMED_5203 .
GeneIDi 9439380.
KEGGi amd:AMED_5203.
PATRICi 42157686. VBIAmyMed151214_5389.

Phylogenomic databases

HOGENOMi HOG000244654.
KOi K01971.
OMAi DIQRNAY.

Enzyme and pathway databases

BioCyci AMED749927:GCZN-5171-MONOMER.

Family and domain databases

InterProi IPR014145. LigD_pol.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
    Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
    , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
    Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: U-32.

Entry informationi

Entry nameiD8I1N5_AMYMU
AccessioniPrimary (citable) accession number: D8I1N5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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