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D8I1N5

- D8I1N5_AMYMU

UniProt

D8I1N5 - D8I1N5_AMYMU

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ligase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAMED749927:GCZN-5171-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMED_5203Imported
    OrganismiAmycolatopsis mediterranei (strain U-32)Imported
    Taxonomic identifieri749927 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000000328: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000244654.
    KOiK01971.
    OMAiDIQRNAY.

    Family and domain databases

    InterProiIPR014145. LigD_pol.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D8I1N5-1 [UniParc]FASTAAdd to Basket

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    MKTSHPDKVF YPEDGLTKGD VVEYYRAVAD VMLPHLRGRP LTLRRFPDGI    50
    GKPGWFQKHP GEHFPDSIRV ERVPRRGGGT DEYVVCEDAA TLEYLANQGT 100
    VEFHVWLSTA DAPERPDRLV LDLDPPDGTP VTELRTVARR IRDHYERVGL 150
    TAFVQATGGR GFHVLAPLDA KSETDVVLEL SRALADRVAG DDPDRLTTAQ 200
    RKDQRGDRIF LDANRNGYAQ TFVAPYSLRA RPGAAAATPL DWRELGTADP 250
    AGWSLVKEKR RLARKEDPWR DLDEHAGSAE AALKQLG 287
    Length:287
    Mass (Da):32,010
    Last modified:October 5, 2010 - v1
    Checksum:iA6379CD8FD0973F5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ46966.1.
    RefSeqiYP_003767368.1. NC_014318.1.

    Genome annotation databases

    EnsemblBacteriaiADJ46966; ADJ46966; AMED_5203.
    GeneIDi9439380.
    KEGGiamd:AMED_5203.
    PATRICi42157686. VBIAmyMed151214_5389.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ46966.1 .
    RefSeqi YP_003767368.1. NC_014318.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ46966 ; ADJ46966 ; AMED_5203 .
    GeneIDi 9439380.
    KEGGi amd:AMED_5203.
    PATRICi 42157686. VBIAmyMed151214_5389.

    Phylogenomic databases

    HOGENOMi HOG000244654.
    KOi K01971.
    OMAi DIQRNAY.

    Enzyme and pathway databases

    BioCyci AMED749927:GCZN-5171-MONOMER.

    Family and domain databases

    InterProi IPR014145. LigD_pol.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
      Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
      , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
      Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: U-32Imported.

    Entry informationi

    Entry nameiD8I1N5_AMYMU
    AccessioniPrimary (citable) accession number: D8I1N5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3