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D8HVD8 (D8HVD8_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:lig EMBL ADJ46382.1
Ordered Locus Names:AMED_4612 EMBL ADJ46382.1
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ46382.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis

Protein attributes

Sequence length314 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADJ46382.1
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionDNA primase activity

Inferred from electronic annotation. Source: InterPro

ligase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8HVD8 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 16DA3AE02B549F3A

FASTA31435,643
        10         20         30         40         50         60 
MADKAVELEV GHRTVRISNP DRVYFPARGE TKLDLVNYYL SVGDGIVNAL RERPCMLHRF 

        70         80         90        100        110        120 
PSGVAGEKVH QKRVPNGAPP WLETVRVTFP RYNRHADELC VTELAHVAWA VQMSTVEFHP 

       130        140        150        160        170        180 
WNSRRADTEK PDEWRIDLDP MPDCGFDRVR RVAHVAHEIL DELGAVGWPK TSGGRGLHIY 

       190        200        210        220        230        240 
VRIEPRWGFT DVRRAALAFA HEVERRAPDD VTTTWWRKDR DPRLLFVDYN QNARDHTIAS 

       250        260        270        280        290        300 
AYSVRGNPEG TVSTPIRWTE IDDAEPGDFT IATVPARFAE VGDLHAGMDD AVFSLDPLLE 

       310 
WADRDGVEEP PEPA 

« Hide

References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002000 Genomic DNA. Translation: ADJ46382.1.
RefSeqYP_003766784.1. NC_014318.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ46382; ADJ46382; AMED_4612.
GeneID9438794.
KEGGamd:AMED_4612.
PATRIC42156450. VBIAmyMed151214_4771.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000244654.
KOK01971.
OMAPDEWRID.

Enzyme and pathway databases

BioCycAMED749927:GCZN-4585-MONOMER.

Family and domain databases

InterProIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8HVD8_AMYMU
AccessionPrimary (citable) accession number: D8HVD8
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)