D8HVD8 (D8HVD8_AMYMU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ADJ46382.1

Gene names

Name:	lig EMBL ADJ46382.1
Ordered Locus Names:	AMED_4612

Organism

Amycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ46382.1

Taxonomic identifier

749927 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis › Amycolatopsis mediterranei

Protein attributes

Sequence length	314 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADJ46382.1
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	DNA primase activity Inferred from electronic annotation. Source: InterPro ligase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8HVD8 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 16DA3AE02B549F3A	FASTA	314	35,643
	10 20 30 40 50 60 MADKAVELEV GHRTVRISNP DRVYFPARGE TKLDLVNYYL SVGDGIVNAL RERPCMLHRF 70 80 90 100 110 120 PSGVAGEKVH QKRVPNGAPP WLETVRVTFP RYNRHADELC VTELAHVAWA VQMSTVEFHP 130 140 150 160 170 180 WNSRRADTEK PDEWRIDLDP MPDCGFDRVR RVAHVAHEIL DELGAVGWPK TSGGRGLHIY 190 200 210 220 230 240 VRIEPRWGFT DVRRAALAFA HEVERRAPDD VTTTWWRKDR DPRLLFVDYN QNARDHTIAS 250 260 270 280 290 300 AYSVRGNPEG TVSTPIRWTE IDDAEPGDFT IATVPARFAE VGDLHAGMDD AVFSLDPLLE 310 WADRDGVEEP PEPA

References

[1]

"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism." Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P. Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: U-32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002000 Genomic DNA. Translation: ADJ46382.1.
RefSeq	YP_003766784.1. NC_014318.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ46382; ADJ46382; AMED_4612.
GeneID	9438794.
KEGG	amd:AMED_4612.
PATRIC	42156450. VBIAmyMed151214_4771.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000244654.
KO	K01971.
Family and domain databases
InterPro	IPR002755. DNA_primase_S. IPR014145. LigD_pol. [Graphical view]
Pfam	PF01896. DNA_primase_S. 1 hit. [Graphical view]
TIGRFAMs	TIGR02778. ligD_pol. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D8HVD8_AMYMU

Accession

Primary (citable) accession number: D8HVD8

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)