Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D8HVD8

- D8HVD8_AMYMU

UniProt

D8HVD8 - D8HVD8_AMYMU

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. DNA primase activity Source: InterPro
    2. ligase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAMED749927:GCZN-4585-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMED_4612Imported
    OrganismiAmycolatopsis mediterranei (strain U-32)Imported
    Taxonomic identifieri749927 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000000328: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000244654.
    KOiK01971.
    OMAiPDEWRID.

    Family and domain databases

    InterProiIPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    [Graphical view]
    PfamiPF01896. DNA_primase_S. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D8HVD8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MADKAVELEV GHRTVRISNP DRVYFPARGE TKLDLVNYYL SVGDGIVNAL    50
    RERPCMLHRF PSGVAGEKVH QKRVPNGAPP WLETVRVTFP RYNRHADELC 100
    VTELAHVAWA VQMSTVEFHP WNSRRADTEK PDEWRIDLDP MPDCGFDRVR 150
    RVAHVAHEIL DELGAVGWPK TSGGRGLHIY VRIEPRWGFT DVRRAALAFA 200
    HEVERRAPDD VTTTWWRKDR DPRLLFVDYN QNARDHTIAS AYSVRGNPEG 250
    TVSTPIRWTE IDDAEPGDFT IATVPARFAE VGDLHAGMDD AVFSLDPLLE 300
    WADRDGVEEP PEPA 314
    Length:314
    Mass (Da):35,643
    Last modified:October 5, 2010 - v1
    Checksum:i16DA3AE02B549F3A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ46382.1.
    RefSeqiWP_013226451.1. NC_014318.1.
    YP_003766784.1. NC_014318.1.

    Genome annotation databases

    EnsemblBacteriaiADJ46382; ADJ46382; AMED_4612.
    GeneIDi9438794.
    KEGGiamd:AMED_4612.
    PATRICi42156450. VBIAmyMed151214_4771.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ46382.1 .
    RefSeqi WP_013226451.1. NC_014318.1.
    YP_003766784.1. NC_014318.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ46382 ; ADJ46382 ; AMED_4612 .
    GeneIDi 9438794.
    KEGGi amd:AMED_4612.
    PATRICi 42156450. VBIAmyMed151214_4771.

    Phylogenomic databases

    HOGENOMi HOG000244654.
    KOi K01971.
    OMAi PDEWRID.

    Enzyme and pathway databases

    BioCyci AMED749927:GCZN-4585-MONOMER.

    Family and domain databases

    InterProi IPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    [Graphical view ]
    Pfami PF01896. DNA_primase_S. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
      Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
      , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
      Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: U-32Imported.

    Entry informationi

    Entry nameiD8HVD8_AMYMU
    AccessioniPrimary (citable) accession number: D8HVD8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3