D8HV72 (D8HV72_AMYMU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
L-arabinose isomerase EMBL ADJ46316.1

Gene names

Name:	araA EMBL ADJ46316.1
Ordered Locus Names:	AMED_4546

Organism

Amycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ46316.1

Taxonomic identifier

749927 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis › Amycolatopsis mediterranei

Protein attributes

Sequence length	473 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the conversion of L-arabinose to L-ribulose By similarity. SAAS SAAS004216
Catalytic activity	L-arabinose = L-ribulose. SAAS SAAS004216
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3.

Ontologies

Keywords
Biological process	Arabinose catabolism SAAS SAAS004216 Carbohydrate metabolism
Ligand	Manganese SAAS SAAS009015 Metal-binding SAAS SAAS009015
Molecular function	Isomerase SAAS SAAS004216 EMBL ADJ46316.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	L-arabinose catabolic process to xylulose 5-phosphate Inferred from electronic annotation. Source: UniProtKB-UniPathway fucose metabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	L-fucose isomerase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D8HV72 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: B532062C509EE8B3	FASTA	473	50,817
	10 20 30 40 50 60 MTLDRITPRK TRVGLVSGGL GAYWPQFPAL LPQLEASARR VSSRLSELDC EVIDAGFVSD 70 80 90 100 110 120 AGEGAAAAEK LRVAGCDLIV GFLTTYLTSS MLAPVAQRSG APVLLLNLQP TEAMDHESFD 130 140 150 160 170 180 TGAWLAYCGA CPLPEMANSF RRLGVEFRSV SGYLDDERAW TRISRWIKAA GVRAALRHGR 190 200 210 220 230 240 HGLLGHLYPG MMDVSTDPTL VSAQLGGHVE ILEVDDLRVR VEKVTDDETA ARVALAREVF 250 260 270 280 290 300 TVDESVVDED FAWGARVSVA LDRLVEDFSL DSLAYYHRGL DGETHERVGA GFILGASLLT 310 320 330 340 350 360 ARGIPAVGEY ELRTSLAMLV MDRLGAGGSF TELQALNFRD GVVEMGHDGP AHLGISARKP 370 380 390 400 410 420 LLRGLGVYHG KRGWGVSVEF DVKHGPVTLC GLGQRRDGKF TLIASEGTVV PGPLLRIGNT 430 440 450 460 470 TSRVDFGCDP GEWTDAWSAG GIAHHWALGT GHRVAELTAV ADLLGLELTV VRP

References

[1]

"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism." Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P. Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: U-32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002000 Genomic DNA. Translation: ADJ46316.1.
RefSeq	YP_003766718.1. NC_014318.1.
3D structure databases
ProteinModelPortal	D8HV72.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADJ46316; ADJ46316; AMED_4546.
GeneID	9438728.
KEGG	amd:AMED_4546.
PATRIC	42156316. VBIAmyMed151214_4704.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000027419.
KO	K01804.
Enzyme and pathway databases
BioCyc	AMED749927:GCZN-4519-MONOMER.
UniPathway	UPA00145; UER00565.
Family and domain databases
Gene3D	3.20.14.10. 1 hit.
InterPro	IPR004216. Fuc/Ara_isomerase_C. IPR015888. Fuc_isomerase_C. IPR009015. Fucose_isomerase_N/cen. [Graphical view]
SUPFAM	SSF50443. Fuc_isomerase_C. 1 hit. SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D8HV72_AMYMU

Accession

Primary (citable) accession number: D8HV72

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 29, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)