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D8HR70 (D8HR70_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:lig EMBL ADJ45972.1
Ordered Locus Names:AMED_4197 EMBL ADJ45972.1
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ45972.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis

Protein attributes

Sequence length299 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADJ45972.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processmetabolic process

Inferred from electronic annotation. Source: GOC

   Molecular_functionligase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D8HR70 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 3856EFC02A18360E

FASTA29933,109
        10         20         30         40         50         60 
MQVGERRLTL SNLEKVLYPR PGFTKGEVLD YYTRIAPVLL PHVRDRAMTF VRFPEGVTGT 

        70         80         90        100        110        120 
SFFEKDVSRH APDWVRTARL TVGGRGKEPE IVAYPLINDL PELVWAANLA ALELHVHQWT 

       130        140        150        160        170        180 
VGPGDERSTP DRLVFDLDPG PGATVVDCCR VAERLHDVLV EDGLTPVAKT SGSKGMQLYA 

       190        200        210        220        230        240 
GIVTTDGGEP SQYAKALAER LAAETPDLVV ARMTKNLRPG KVFIDWSQNN PFKTTVAPYS 

       250        260        270        280        290 
LRGRDEPTVS APVTWDEVRA CRHVTHLRFT AGEVLARVED IGDLFADLER TRVPILAFG 

« Hide

References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002000 Genomic DNA. Translation: ADJ45972.1.
RefSeqYP_003766374.1. NC_014318.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ45972; ADJ45972; AMED_4197.
GeneID9438384.
KEGGamd:AMED_4197.
PATRIC42155589. VBIAmyMed151214_4341.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000244654.
KOK01971.
OMAKIFIDWS.

Enzyme and pathway databases

BioCycAMED749927:GCZN-4175-MONOMER.

Family and domain databases

InterProIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8HR70_AMYMU
AccessionPrimary (citable) accession number: D8HR70
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: February 19, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)