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D8HR23

- D8HR23_AMYMU

UniProt

D8HR23 - D8HR23_AMYMU

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain U-32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAMED749927:GCZN-4128-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMED_4148Imported
    OrganismiAmycolatopsis mediterranei (strain U-32)Imported
    Taxonomic identifieri749927 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000000328: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD8HR23.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222508.
    KOiK01971.
    OMAiHERTADC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8HR23-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPPVRPMLAK AVHEVPRDPG LLYEPKWDGF RCVVFRDGDE IELGSRNDRP    50
    LTRYFPELVE LLAAALPPRC VVDGEIVLVT PAGLDFEVLQ LRLHPAASRV 100
    RKLAEETPAS FIAFDLLALG DTDLTEEPFR ERRKQLESVL STAAEGLQRV 150
    HLTPLSDDPA QAEDWFTRFE GAGFDGVMAK PGDLPYEQDK RVMLKVKHER 200
    TADCVVTGFR WHKDGAGVGS LLLGLFDDEG VLHHVGVASS FTKARRAELV 250
    DELAPLRENA LEGHPWRNWA EYEPQPGRQP GANSRWAPQK DLSWEPLRPE 300
    WVAEVRYEHL QGGRFRHGGR LVRFRPDRTP ESCTYAQLDE APPAELAKLL 350
    GEAR 354
    Length:354
    Mass (Da):39,853
    Last modified:October 5, 2010 - v1
    Checksum:i836C1C906AD7ED23
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ45925.1.
    RefSeqiYP_003766327.1. NC_014318.1.

    Genome annotation databases

    EnsemblBacteriaiADJ45925; ADJ45925; AMED_4148.
    GeneIDi9438337.
    KEGGiamd:AMED_4148.
    PATRICi42155487. VBIAmyMed151214_4290.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002000 Genomic DNA. Translation: ADJ45925.1 .
    RefSeqi YP_003766327.1. NC_014318.1.

    3D structure databases

    ProteinModelPortali D8HR23.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADJ45925 ; ADJ45925 ; AMED_4148 .
    GeneIDi 9438337.
    KEGGi amd:AMED_4148.
    PATRICi 42155487. VBIAmyMed151214_4290.

    Phylogenomic databases

    HOGENOMi HOG000222508.
    KOi K01971.
    OMAi HERTADC.

    Enzyme and pathway databases

    BioCyci AMED749927:GCZN-4128-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
      Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y.
      , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
      Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: U-32Imported.

    Entry informationi

    Entry nameiD8HR23_AMYMU
    AccessioniPrimary (citable) accession number: D8HR23
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3