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D8HKD3 (D8HKD3_AMYMU) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:gadB EMBL ADJ50560.1
Ordered Locus Names:AMED_8869 EMBL ADJ50560.1
OrganismAmycolatopsis mediterranei (strain U-32) [Complete proteome] [HAMAP] EMBL ADJ50560.1
Taxonomic identifier749927 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis

Protein attributes

Sequence length462 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D8HKD3 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: D2D44AF965447041

FASTA46251,110
        10         20         30         40         50         60 
MVLHQGKAGR PDRTAGTNPL YAGANPALAA GFVMPHDKLR EDSLPPDTAL QLVRDELMLD 

        70         80         90        100        110        120 
GNARLNLATF VTTWMEPQAR ELMAECVDKN MIDKDEYPQT AELERRCVNI LADLWHAPDP 

       130        140        150        160        170        180 
GDVMGCSTTG SSEACMLAGM ALKRRWSKLG RTGKPNLVMG ANVQVCWEKF CEYWEVEPRL 

       190        200        210        220        230        240 
VPMDGDRYHL TADEAVARCD ENTIGVVAIL GSTFDGSYEP VAEIAAALDS LEERTGWDIP 

       250        260        270        280        290        300 
VHVDGASGAM IAPFLDPHLE WDFRLPRVAS INTSGHKYGL VYPGVGWVLW RDKAALPSEL 

       310        320        330        340        350        360 
VFNVNYLGGD MPTFALNFSR PGAEVAAQYY TFVRLGREGF RAVQQASRDV ALHLSSGIAS 

       370        380        390        400        410        420 
LGPFSLLTRG DQLPVFAFTT RPDVGFDVFD VSRRLRERGW LVPAYTFPEN RTDLAVLRIV 

       430        440        450        460 
VRNGFTHDLA DLLLADLRRV LPELEQFGGR PKDPAKATAF HH 

« Hide

References

[1]"Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism."
Zhao W., Zhong Y., Yuan H., Wang J., Zheng H., Wang Y., Cen X., Xu F., Bai J., Han X., Lu G., Zhu Y., Shao Z., Yan H., Li C., Peng N., Zhang Z., Zhang Y. expand/collapse author list , Lin W., Fan Y., Qin Z., Hu Y., Zhu B., Wang S., Ding X., Zhao G.P.
Cell Res. 20:1096-1108(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: U-32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002000 Genomic DNA. Translation: ADJ50560.1.
RefSeqYP_003770962.1. NC_014318.1.

3D structure databases

ProteinModelPortalD8HKD3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADJ50560; ADJ50560; AMED_8869.
GeneID9443004.
KEGGamd:AMED_8869.
PATRIC42165377. VBIAmyMed151214_9209.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000070228.
KOK01580.
OMAIADLWNA.

Enzyme and pathway databases

BioCycAMED749927:GCZN-8795-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD8HKD3_AMYMU
AccessionPrimary (citable) accession number: D8HKD3
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)