Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D8GJ42 (D8GJ42_CLOLD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf1 EMBL ADK17130.1
Synonyms:tuf HAMAP-Rule MF_00118, tuf2 EMBL ADK17144.1
Ordered Locus Names:CLJU_c41060 EMBL ADK17130.1, CLJU_c41200 EMBL ADK17144.1
OrganismClostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) [Complete proteome] [HAMAP] EMBL ADK17130.1
Taxonomic identifier748727 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Protein attributes

Sequence length397 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D8GJ42 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: D3E4795EB815DA8A

FASTA39743,791
        10         20         30         40         50         60 
MSKEKYERTK PHVNIGTIGH VDHGKTTLTA AITMVLSKEG KAAATKYDEI DKAPEEKERG 

        70         80         90        100        110        120 
ITINTAHVEY ETDKRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLASRVGVQY IVVFLNKSDQ VDDPELLELV EMEVRELLSE YGFPGDDVPI IVGSALKVLE 

       190        200        210        220        230        240 
NPDDPETTKC IHELMDAVDE YIPTPERPTD KDFLMPIEDV FTITGRGTVA TGRVESGVLK 

       250        260        270        280        290        300 
IGDELEIVGL KEEKKKTTCT GVEMFRKLLD QAMAGDNIGV LLRGIQRDEV ERGQVLAKPG 

       310        320        330        340        350        360 
TVHPHKKFVG QVYVLKKEEG GRHTPFFNGY RPQFYFRTTD VTGSIALPEG VEMVMPGDHI 

       370        380        390 
DMNVELITPV AMHEGLRFAI REGGRTVGSG VVTTITE 

« Hide

References

« Hide 'large scale' references
[1]Koepke M., Hujer S., Held C., Wiezer A., Liesegang H., Ehrenreich A., Gottschalk G., Duerre P.
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 13528 EMBL ADK17130.1.
[2]"Clostridium ljungdahlii represents a microbial production platform based on syngas."
Kopke M., Held C., Hujer S., Liesegang H., Wiezer A., Wollherr A., Ehrenreich A., Liebl W., Gottschalk G., Durre P.
Proc. Natl. Acad. Sci. U.S.A. 107:13087-13092(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 55383 / DSM 13528 / PETC and DSM 13528 EMBL ADK17130.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001666 Genomic DNA. Translation: ADK17130.1.
CP001666 Genomic DNA. Translation: ADK17144.1.
RefSeqYP_003782232.1. NC_014328.1.
YP_003782246.1. NC_014328.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADK17130; ADK17130; CLJU_c41060.
ADK17144; ADK17144; CLJU_c41200.
GeneID9447722.
9447736.
KEGGclj:CLJU_c41060.
clj:CLJU_c41200.
PATRIC42489653. VBICloLju82977_4165.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMASSYSISH.

Enzyme and pathway databases

BioCycCLJU748727:GHMO-4105-MONOMER.
CLJU748727:GHMO-4119-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8GJ42_CLOLD
AccessionPrimary (citable) accession number: D8GJ42
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)