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D8GI25 (D8GI25_CLOLD) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length440 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1011 By similarity HAMAP-Rule MF_00455
Active site1041 By similarity HAMAP-Rule MF_00455
Metal binding2321Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2711Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2961Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3071Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3091Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3391Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
D8GI25 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: A76171A640A04875

FASTA44050,112
        10         20         30         40         50         60 
MKEYFNNVSK INYEGPDSKN PYSFKYYNPD EVIGGKKMRD HLRFSMSYWH TLTANGTDQF 

        70         80         90        100        110        120 
GSGTMVRPWD NVNDKMELAK ARMEAAFEFM NKLDIDYFCF HDRDIAPEGK DLAETNKNLD 

       130        140        150        160        170        180 
EIVAMCKDLM KKNNKKLLWG TANLFNNPRF VHGAGTTCNA NVYAYSAAQL KKAIEVTNEL 

       190        200        210        220        230        240 
GGENYVFWGG REGYETLLNT DMGFEMDNFA RILQMAVDYA KKIGFKGQFL IEPKPKEPTK 

       250        260        270        280        290        300 
HQYDFDVATV LGFLRKYKLE DYFKINIEAN HATLAGHTFQ HEICLARNNN ALGSLDANQG 

       310        320        330        340        350        360 
DPHLGWDTDQ FPTNVYDTTL SMYEVLKNGG IAPGGLNFDA KVRRASFEPE DLFLAYIAGM 

       370        380        390        400        410        420 
DSFAKGLRVA YKLLQDAPIE NFIKERYSSF STGIGKDIVD GKVGFDELEK YALENNVINN 

       430        440 
KSGRQEYLES VVNQYILEDK 

« Hide

References

[1]"Clostridium ljungdahlii represents a microbial production platform based on syngas."
Kopke M., Held C., Hujer S., Liesegang H., Wiezer A., Wollherr A., Ehrenreich A., Liebl W., Gottschalk G., Durre P.
Proc. Natl. Acad. Sci. U.S.A. 107:13087-13092(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 55383 / DSM 13528 / PETC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001666 Genomic DNA. Translation: ADK14887.1.
RefSeqYP_003779989.1. NC_014328.1.

3D structure databases

ProteinModelPortalD8GI25.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADK14887; ADK14887; CLJU_c18240.
GeneID9445441.
KEGGclj:CLJU_c18240.
PATRIC42484881. VBICloLju82977_1807.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000252293.
KOK01805.
OMACMDATHK.

Enzyme and pathway databases

BioCycCLJU748727:GHMO-1824-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8GI25_CLOLD
AccessionPrimary (citable) accession number: D8GI25
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 11, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)