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D7TDS0

- D7TDS0_VITVI

UniProt

D7TDS0 - D7TDS0_VITVI

Protein
Submitted name:

Putative uncharacterized protein

Gene

VIT_04s0043g00400

Organism
Vitis vinifera (Grape)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (10 Aug 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Ordered Locus Names:VIT_04s0043g00400Imported
    OrganismiVitis vinifera (Grape)Imported
    Taxonomic identifieri29760 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
    ProteomesiUP000009183: Chromosome 4

    Subcellular locationi

    GO - Cellular componenti

    1. exosome (RNase complex) Source: InterPro

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000177330.
    KOiK07573.
    OMAiCDIISIG.

    Family and domain databases

    InterProiIPR019495. EXOSC1.
    IPR025721. Exosome_cplx_N_dom.
    IPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    [Graphical view]
    PfamiPF14382. ECR1_N. 1 hit.
    PF10447. EXOSC1. 1 hit.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D7TDS0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQEREEAEEL VTPGEVLGKG SQLKAGRGAY FLPQNGTVYA SLTGRRSLIP    50
    PSPLSSDQRP TVEVTGHSAH GAIPEPGSIV IARVTKVMAR MASADIMCVG 100
    PKSVREKFTG IIRQQDVRAT EIDKVDMHSS FRPGDIVRAL VLSLGDARAY 150
    FLSTAKNELG VVSAESAAGA TMVPMSWTEM QCPLTGQIEQ RKVAKVGGQA 200
    Length:200
    Mass (Da):21,334
    Last modified:August 10, 2010 - v1
    Checksum:i224BDBEB650DC4F8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN595763 Genomic DNA. Translation: CBI28643.3.
    RefSeqiXP_002266663.1. XM_002266627.1.
    UniGeneiVvi.2923.

    Genome annotation databases

    EnsemblPlantsiVIT_04s0043g00400.t01; VIT_04s0043g00400.t01; VIT_04s0043g00400.
    GeneIDi100263947.
    KEGGivvi:100263947.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN595763 Genomic DNA. Translation: CBI28643.3 .
    RefSeqi XP_002266663.1. XM_002266627.1.
    UniGenei Vvi.2923.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi VIT_04s0043g00400.t01 ; VIT_04s0043g00400.t01 ; VIT_04s0043g00400 .
    GeneIDi 100263947.
    KEGGi vvi:100263947.

    Phylogenomic databases

    HOGENOMi HOG000177330.
    KOi K07573.
    OMAi CDIISIG.

    Family and domain databases

    InterProi IPR019495. EXOSC1.
    IPR025721. Exosome_cplx_N_dom.
    IPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    [Graphical view ]
    Pfami PF14382. ECR1_N. 1 hit.
    PF10447. EXOSC1. 1 hit.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
      The French-Italian Public Consortium for Grapevine Genome Characterization.
      Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
      , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
      Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Pinot noir / PN40024Imported.

    Entry informationi

    Entry nameiD7TDS0_VITVI
    AccessioniPrimary (citable) accession number: D7TDS0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 10, 2010
    Last sequence update: August 10, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3