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D7TDS0

- D7TDS0_VITVI

UniProt

D7TDS0 - D7TDS0_VITVI

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Protein
Submitted name: Putative uncharacterized protein
Gene
VIT_04s0043g00400
Organism
Vitis vinifera (Grape)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Ordered Locus Names:VIT_04s0043g00400Imported
OrganismiVitis vinifera (Grape)
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
ProteomesiUP000009183: Chromosome 4

Subcellular locationi

GO - Cellular componenti

  1. exosome (RNase complex) Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000177330.
KOiK07573.
OMAiCDIISIG.

Family and domain databases

InterProiIPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamiPF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

D7TDS0-1 [UniParc]FASTAAdd to Basket

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MQEREEAEEL VTPGEVLGKG SQLKAGRGAY FLPQNGTVYA SLTGRRSLIP    50
PSPLSSDQRP TVEVTGHSAH GAIPEPGSIV IARVTKVMAR MASADIMCVG 100
PKSVREKFTG IIRQQDVRAT EIDKVDMHSS FRPGDIVRAL VLSLGDARAY 150
FLSTAKNELG VVSAESAAGA TMVPMSWTEM QCPLTGQIEQ RKVAKVGGQA 200
Length:200
Mass (Da):21,334
Last modified:August 10, 2010 - v1
Checksum:i224BDBEB650DC4F8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN595763 Genomic DNA. Translation: CBI28643.3.
RefSeqiXP_002266663.1. XM_002266627.1.
UniGeneiVvi.2923.

Genome annotation databases

EnsemblPlantsiVIT_04s0043g00400.t01; VIT_04s0043g00400.t01; VIT_04s0043g00400.
GeneIDi100263947.
KEGGivvi:100263947.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN595763 Genomic DNA. Translation: CBI28643.3 .
RefSeqi XP_002266663.1. XM_002266627.1.
UniGenei Vvi.2923.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi VIT_04s0043g00400.t01 ; VIT_04s0043g00400.t01 ; VIT_04s0043g00400 .
GeneIDi 100263947.
KEGGi vvi:100263947.

Phylogenomic databases

HOGENOMi HOG000177330.
KOi K07573.
OMAi CDIISIG.

Family and domain databases

InterProi IPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR022967. RNA-binding_domain_S1.
[Graphical view ]
Pfami PF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    The French-Italian Public Consortium for Grapevine Genome Characterization.
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
    Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Pinot noir / PN40024.

Entry informationi

Entry nameiD7TDS0_VITVI
AccessioniPrimary (citable) accession number: D7TDS0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: March 19, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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