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Protein
Submitted name:

Putative uncharacterized protein

Gene

VIT_04s0043g00400

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: EnsemblPlants/Gramene
  2. structural constituent of ribosome Source: EnsemblPlants/Gramene

GO - Biological processi

  1. protein targeting to mitochondrion Source: EnsemblPlants/Gramene
  2. translation Source: EnsemblPlants/Gramene
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Ordered Locus Names:VIT_04s0043g00400Imported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
ProteomesiUP000009183 Componenti: Chromosome 4

Subcellular locationi

GO - Cellular componenti

  1. exosome (RNase complex) Source: EnsemblPlants/Gramene
  2. ribosome Source: EnsemblPlants/Gramene
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000177330.
InParanoidiD7TDS0.
KOiK07573.
OMAiPPGSTDQ.

Family and domain databases

InterProiIPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR022967. S1_dom.
[Graphical view]
PfamiPF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

D7TDS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQEREEAEEL VTPGEVLGKG SQLKAGRGAY FLPQNGTVYA SLTGRRSLIP
60 70 80 90 100
PSPLSSDQRP TVEVTGHSAH GAIPEPGSIV IARVTKVMAR MASADIMCVG
110 120 130 140 150
PKSVREKFTG IIRQQDVRAT EIDKVDMHSS FRPGDIVRAL VLSLGDARAY
160 170 180 190 200
FLSTAKNELG VVSAESAAGA TMVPMSWTEM QCPLTGQIEQ RKVAKVGGQA
Length:200
Mass (Da):21,334
Last modified:August 9, 2010 - v1
Checksum:i224BDBEB650DC4F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN595763 Genomic DNA. Translation: CBI28643.3.
UniGeneiVvi.2923.

Genome annotation databases

EnsemblPlantsiVIT_04s0043g00400.t01; VIT_04s0043g00400.t01; VIT_04s0043g00400.
KEGGivvi:100263947.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN595763 Genomic DNA. Translation: CBI28643.3.
UniGeneiVvi.2923.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiVIT_04s0043g00400.t01; VIT_04s0043g00400.t01; VIT_04s0043g00400.
KEGGivvi:100263947.

Phylogenomic databases

HOGENOMiHOG000177330.
InParanoidiD7TDS0.
KOiK07573.
OMAiPPGSTDQ.

Family and domain databases

InterProiIPR019495. EXOSC1.
IPR025721. Exosome_cplx_N_dom.
IPR012340. NA-bd_OB-fold.
IPR022967. S1_dom.
[Graphical view]
PfamiPF14382. ECR1_N. 1 hit.
PF10447. EXOSC1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    The French-Italian Public Consortium for Grapevine Genome Characterization.
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
    Nature 449:463-467(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Pinot noir / PN40024Imported.

Entry informationi

Entry nameiD7TDS0_VITVI
AccessioniPrimary (citable) accession number: D7TDS0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 9, 2010
Last sequence update: August 9, 2010
Last modified: March 3, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.