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D7SQB3

- D7SQB3_VITVI

UniProt

D7SQB3 - D7SQB3_VITVI

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Protein
Ribulose bisphosphate carboxylase small chain
Gene
VIT_11s0052g00820
Organism
Vitis vinifera (Grape)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.UniRule annotationSAAS annotations

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotations
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. monooxygenase activity Source: UniProtKB-KW
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbon fixation Source: UniProtKB-KW
  2. photorespiration Source: UniProtKB-KW
  3. photosynthesis Source: UniProtKB-KW
  4. response to blue light Source: EnsemblPlants/Gramene
  5. response to far red light Source: EnsemblPlants/Gramene
  6. response to red light Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotations, MonooxygenaseUniRule annotationSAAS annotations, Oxidoreductase

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotations, PhotorespirationUniRule annotation, PhotosynthesisUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Gene namesi
Ordered Locus Names:VIT_11s0052g00820Imported
OrganismiVitis vinifera (Grape)
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
ProteomesiUP000009183: Chromosome 11

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. chloroplast envelope Source: EnsemblPlants/Gramene
  3. chloroplast stroma Source: EnsemblPlants/Gramene
  4. cytosolic ribosome Source: EnsemblPlants/Gramene
  5. membrane Source: EnsemblPlants/Gramene
  6. thylakoid Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

PlastidUniRule annotation

Interactioni

Subunit structurei

8 large chains + 8 small chains By similarity.UniRule annotationSAAS annotations

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO small chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000141332.
KOiK01602.
OMAiRCLAFDN.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
[Graphical view]
PfamiPF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSiPR00152. RUBISCOSMALL.
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

D7SQB3-1 [UniParc]FASTAAdd to Basket

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MAAGILSGPV TSFGYVGLKP HQPKLFPAKD SVAWSRKTVS NGSKTHCMKT    50
WNPINNKKFE TLSYLPPLSD DSIAKEIDYM LKKGWIPCLE FDEVGYVFRK 100
NSQIPGYYDG RYWTLWKLPM FGCNDASQVL NEIHECKKTY PNAYIRCLAF 150
DNEHQGQCMA FVIQKPTCS 169
Length:169
Mass (Da):19,273
Last modified:August 10, 2010 - v1
Checksum:i270C770608FE77A7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN594964 Genomic DNA. Translation: CBI17844.3.
RefSeqiXP_002270117.1. XM_002270081.1.
UniGeneiVvi.3492.

Genome annotation databases

EnsemblPlantsiVIT_11s0052g00820.t01; VIT_11s0052g00820.t01; VIT_11s0052g00820.
GeneIDi100256536.
KEGGivvi:100256536.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN594964 Genomic DNA. Translation: CBI17844.3 .
RefSeqi XP_002270117.1. XM_002270081.1.
UniGenei Vvi.3492.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi VIT_11s0052g00820.t01 ; VIT_11s0052g00820.t01 ; VIT_11s0052g00820 .
GeneIDi 100256536.
KEGGi vvi:100256536.

Phylogenomic databases

HOGENOMi HOG000141332.
KOi K01602.
OMAi RCLAFDN.

Family and domain databases

Gene3Di 3.30.190.10. 1 hit.
InterProi IPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
[Graphical view ]
Pfami PF00101. RuBisCO_small. 1 hit.
[Graphical view ]
PRINTSi PR00152. RUBISCOSMALL.
SUPFAMi SSF55239. SSF55239. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    The French-Italian Public Consortium for Grapevine Genome Characterization.
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
    Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Pinot noir / PN40024.

Entry informationi

Entry nameiD7SQB3_VITVI
AccessioniPrimary (citable) accession number: D7SQB3
Entry historyi
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 14, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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