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D7MC36 (D7MC36_ARALL) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase RuleBase RU004279
EC=2.7.7.6 RuleBase RU004279
Gene names
ORF Names:ARALYDRAFT_491060 EMBL EFH43311.1
OrganismArabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) [Complete proteome]
Taxonomic identifier81972 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis ›

Protein attributes

Sequence length1839 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). RuleBase RU004279

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RuleBase RU004279

Sequences

Sequence LengthMass (Da)Tools
D7MC36 [UniParc].

Last modified August 10, 2010. Version 1.
Checksum: 64A656AD9D8F6BC5

FASTA1,839204,645
        10         20         30         40         50         60 
MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDIRLGTI 

        70         80         90        100        110        120 
DRKVKCETCM ANMAECPGHF GHLELAKPMY HVGFMKTVLS IMRCVCFNCS KILADEVCRN 

       130        140        150        160        170        180 
LSRQAMKIKN PKNRLKKILD ACKNKTKCEG GDDIDDVQNQ DTDEPVKKSR GGCGAQQPKL 

       190        200        210        220        230        240 
TIEGMKMIAE YKIPRKKNDE PDQLPEPAER KQTLGADRVL SVLKRISDED CQLLGFNPKF 

       250        260        270        280        290        300 
ARPDWMILEV LPIPPPPVRP SVMMDATSRS EDDLTHQLAM IIRHNENLKR QEKNGAPAHI 

       310        320        330        340        350        360 
ISEFTQLLQF HIATYFDNEL PGQPRATQKS GRPIKSICSR LKAKEGRIRG NLMGKRVDFS 

       370        380        390        400        410        420 
ARTVITPDPT INIDELGVPW SIALNLTYPE TVTPYNIERL QELVDYGPHP PPGKTGAKYI 

       430        440        450        460        470        480 
IRDDGQRLDL RYLKKSSDQH LELGYKVERH LQDGDFVLFN RQPSLHKMSI MGHRIRIMPY 

       490        500        510        520        530        540 
STFRLNLSVT SPYNADFDGD EMNMHVPQSF ETRAEVLELM MVPKCIVSPQ ANRPVMGIVQ 

       550        560        570        580        590        600 
DTLLGCRKIT KRDTFIEKDV FMNTLMWWED FDGKVPAPAI LKPRPLWTGK QVFNLIIPKQ 

       610        620        630        640        650        660 
INLLRYSAWH ADTETGFITP GDTQVRIERG ELLAGTLCKK TLGTSNGSLV HVIWEEVGPD 

       670        680        690        700        710        720 
AARKFLGHTQ WLVNYWLLQN GFTIGIGDTI ADSSTMEKIN ETISNAKTAV KDLIRQFQEK 

       730        740        750        760        770        780 
KLDPEPGRTM TETFENRVNQ VLNKARDDAG SSAQKSLAET NNLKAMVTAG SKGSFINISQ 

       790        800        810        820        830        840 
MTACVGQQNV EGKRIPFGFD GRTLPHFTKD DYGPESRGFV ENSYLRGLTP QEFFFHAMGG 

       850        860        870        880        890        900 
REGLIDTAVK TSETGYIQRR LVKAMEDIMV KYDGTVRNSL GDVIQFLYGE DGMDAVWIES 

       910        920        930        940        950        960 
QKLDSLKMKK SEFDRTFKYE IDDENWNPTY LSDEHLEDLK GIRELRDVFD AEYSKLETDR 

       970        980        990       1000       1010       1020 
FQLGTEIATN GDSTWPLPVN IKRHIWNAQK TFKIDLRKIS DMHPVEIVDA VDKLQERLLV 

      1030       1040       1050       1060       1070       1080 
VPGDDALSVE AQKNATLFFN ILLRSTLASK RVLEEYKLSR EAFEWVIGEI ESRFLQSLVA 

      1090       1100       1110       1120       1130       1140 
PGEMIGCVAA QSIGEPATQM TLNTFHYAGV SAKNVTLGVP RLREIINVAK RIKTPSLSVY 

      1150       1160       1170       1180       1190       1200 
LTPEASKSKE GAKTVQCALE YTTLRSVTQA TEVWYDPDPM STIIEEDFEF VRSYYEMPDE 

      1210       1220       1230       1240       1250       1260 
DVSPDKISPW LLRIELNREM MVDKKLSMAD IAEKINLEFD DDLTCIFNDD NAQKLILRIR 

      1270       1280       1290       1300       1310       1320 
IMNDEGPKGE LQDESAEDDV FLKKIESNML TEMALRGIPD INKVFIKQVR KSRFDEEGGF 

      1330       1340       1350       1360       1370       1380 
KTSEEWMLDT EGVNLLAVMC HEDVDPKRTT SNHLIEIIEV LGIEAVRRAL LDELRVVISF 

      1390       1400       1410       1420       1430       1440 
DGSYVNYRHL AILCDTMTYR GHLMAITRHG INRNDTGPLM RCSFEETVDI LLDAAAYAET 

      1450       1460       1470       1480       1490       1500 
DCLRGVTENI MLGQLAPIGT GDCELYLNDE MLKNAIELQL PSYMDGLEFG MTPARSPVSG 

      1510       1520       1530       1540       1550       1560 
TPYHEGMMSP NYLLSPNMRL SPMSDAQFSP YVGGMAFSPS SSPGYSPSSP GYSPTSPGYS 

      1570       1580       1590       1600       1610       1620 
PTSPGYSPTS PGYSPTSPTY SPSSPGYSPT SPAYSPTSPS YSPTSPSYSP TSPSYSPTSP 

      1630       1640       1650       1660       1670       1680 
SYSPTSPSYS PTSPSYSPTS PAYSPTSPAY SPTSPAYSPT SPSYSPTSPS YSPTSPSYSP 

      1690       1700       1710       1720       1730       1740 
TSPSYSPTSP SYSPTSPAYS PTSPGYSPTS PSYSPTSPSY GPTSPSYNPQ SAKYSPSIAY 

      1750       1760       1770       1780       1790       1800 
SPSNARLSPA SPYSPTSPNY SPTSPSYSPT SPSYSPSSPT YSPSSPYSSG ASPDYSPSAG 

      1810       1820       1830 
YSPTLPGYSP SSTGQYTPHE GEKNAKTGKD VSKDDKSNP

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		GL348719 Genomic DNA. Translation: EFH43311.1.
RefSeqXP_002867052.1. XM_002867006.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9305132.
KEGGaly:ARALYDRAFT_491060.

Phylogenomic databases

KOK03006.

Family and domain databases

Gene3D2.40.40.20. 2 hits.
InterProIPR009010. Asp_de-COase-like_dom.
IPR000722. RNA_pol_asu.
IPR000684. RNA_pol_II_repeat_euk.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
IPR007075. RNA_pol_Rpb1_6.
IPR007073. RNA_pol_Rpb1_7.
[Graphical view]
PfamPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
PF04992. RNA_pol_Rpb1_6. 1 hit.
PF04990. RNA_pol_Rpb1_7. 1 hit.
PF05001. RNA_pol_Rpb1_R. 25 hits.
[Graphical view]
SMARTSM00663. RPOLA_N. 1 hit.
[Graphical view]
PROSITEPS00115. RNA_POL_II_REPEAT. 23 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD7MC36_ARALL
AccessionPrimary (citable) accession number: D7MC36
Entry history
Integrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info