D7M5X9 (D7M5X9_ARALL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Zinc knuckle (CCHC-type) family protein EMBL EFH49896.1

Gene names

ORF Names:

ARALYDRAFT_488218 EMBL EFH49896.1

Organism

Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) [Complete proteome]

Taxonomic identifier

81972 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis › Arabidopsis lyrata

Protein attributes

Sequence length	397 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Zinc-finger RuleBase RU000338
Ligand	Metal-binding Zinc
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	nucleic acid binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D7M5X9 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: 125226D157FEB49A	FASTA	397	44,484
	10 20 30 40 50 60 MQTGNCFRCR QAGHWISDCP LKSKTDDDPP PAIHCTCGGG FCEIKVANTR ENPGRKFYKC 70 80 90 100 110 120 PTAQNCKFFK WCDKVTDEDI RFRPAFTIPI CSCGAGPCRR VKDVSGRAYL ICCIKEGFGA 130 140 150 160 170 180 CGFFKWEDAE MIPSCDVMDE IDFWVEADQI LSDVESSFQA RGGVIPEIAN QMASEKECQA 190 200 210 220 230 240 SVSGAEDDST LENLDSTSMS VSDVHFIALN QGIPLFEPFS IEPEEAWKKT PHGDQPTNSA 250 260 270 280 290 300 LSKLSVDEAV SDLIRDTVSS GSVVIHGRTT LEQPGIGEAE WLFPYLQDLI DQYNSEKLQL 310 320 330 340 350 360 ESISGKHVQV LSEFMSSYRR LRLLHEKTCH LRKTLLETEK EMVCCEAETL EFGASCREVA 370 380 390 GEMAESQKRM QETAEQLGKE VEVFKQNEFV APKRRRC

References

[1]

"The Arabidopsis lyrata genome sequence and the basis of rapid genome size change." Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K., Spannagl M., Wang X. , Yang L., Nasrallah M.E., Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L. Nat. Genet. 43:476-481(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. MN47.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL348718 Genomic DNA. Translation: EFH49896.1.
RefSeq	XP_002873637.1. XM_002873591.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9309705.
KEGG	aly:ARALYDRAFT_488218.
Phylogenomic databases
KO	K10569.
Family and domain databases
Gene3D	4.10.60.10. 1 hit.
InterPro	IPR001878. Znf_CCHC. IPR010666. Znf_GRF. [Graphical view]
Pfam	PF00098. zf-CCHC. 1 hit. PF06839. zf-GRF. 1 hit. [Graphical view]
SMART	SM00343. ZnF_C2HC. 1 hit. [Graphical view]
PROSITE	PS50158. ZF_CCHC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D7M5X9_ARALL

Accession

Primary (citable) accession number: D7M5X9

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	April 3, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)