D7LTR3 (D7LTR3_ARALL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
EMB2221 EMBL EFH54777.1

Gene names

ORF Names:

ARALYDRAFT_907933 EMBL EFH54777.1

Organism

Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) [Complete proteome]

Taxonomic identifier

81972 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis › Arabidopsis lyrata

Protein attributes

Sequence length	1104 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Repeat RuleBase RU003532 WD repeat RuleBase RU000362
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	D7LTR3 [UniParc]. Last modified August 10, 2010. Version 1. Checksum: BC0ED858526A5F14	FASTA	1,104	119,908
	10 20 30 40 50 60 MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE 70 80 90 100 110 120 SPSSERFHRL AWGRNGSGSE EFSLGLIAGG LVDGNIDLWN PLSLIGSQPS ENALVGHLSV 130 140 150 160 170 180 HKGPVRGLEF NAINPNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW 190 200 210 220 230 240 NRKVQQILAS TSYNGTTVIW DLRKQKPIIN FADSVRRRCS VLQWNPNITT QIMVASDDDS 250 260 270 280 290 300 SPTLKLWDMR NILSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA 310 320 330 340 350 360 ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGAEENNFG TAPLRAPKWY 370 380 390 400 410 420 KRPVGASFGF GGKLVSCHAR APAKGTSSIL SEVFLHSLVT EQSLVSRTSE FEAAIENGDM 430 440 450 460 470 480 TSLRGLCEKK SEETESEEEK ETWGLLKIMF EEEGTSRTKL ISHLGFTLPI AENDQAVNGL 490 500 510 520 530 540 SSDLNGNRLE DTAADAMEPD DSNEAAAFAM DNGEDFFNNF PAKPDTPVST SAKDFMPSDT 550 560 570 580 590 600 DFSTKAEETQ EMQEEEEESS DPVFDNAIQR ALIVGDYKEA VDQCISANKM ADALVIAHVG 610 620 630 640 650 660 GTALWESTRE KYLKTSSAPY MKVVSAMVNN DLRSLIYTRS HKFWKETLAL LCTFAQGEQW 670 680 690 700 710 720 TTLCDALASK LMAAGNTLAA VLCYICAGNV DRTVEIWSRS LANERDGRSY AELLQDLMEK 730 740 750 760 770 780 TLVLALATGN KKFSASLCKL FESYAEILAS QGLLTTAMKY LKVLDSGGLS PELSILRDRI 790 800 810 820 830 840 SLSAEPETNT AASGNTQPQS TMPYNQEPTQ AQPNVLANPY DNQYQQPYTD SYYVPQASHP 850 860 870 880 890 900 PMQQPTMFMP HQAQPAPQPS FTPAPASNAQ PTMRTTFVPS TPPALKNADQ YQQPTMSSHS 910 920 930 940 950 960 FTGPSNNAYP VRPGPGTYAP SGPSQVGQYP NPKMPQVVAP AAGPKGFTPM ATPGVAPRSV 970 980 990 1000 1010 1020 QPASPPTQQA AAQAAPTPAT PPPTVQTADT SNVPAHQKPV IATLTRLFNE TSEALGGARA 1030 1040 1050 1060 1070 1080 NPTKKREIED NSRKLGALFV KLNSGDISKN AADKLAQLCQ ALDNNDYSAA LQIQVLLTTN 1090 1100 EWDECNFWLA TLKRMMVKAR QSVR

References

[1]

"The Arabidopsis lyrata genome sequence and the basis of rapid genome size change." Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M., Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G., Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K., Spannagl M., Wang X. , Yang L., Nasrallah M.E., Bergelson J., Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y., Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L. Nat. Genet. 43:476-481(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. MN47.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GL348717 Genomic DNA. Translation: EFH54777.1.
RefSeq	XP_002878518.1. XM_002878472.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9314586.
KEGG	aly:ARALYDRAFT_907933.
Phylogenomic databases
KO	K14005.
Family and domain databases
Gene3D	2.130.10.10. 2 hits.
InterPro	IPR009917. SRA1-protein/COPII_Sec31. IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR019775. WD40_repeat_CS. IPR017986. WD40_repeat_dom. [Graphical view]
Pfam	PF07304. SRA1. 1 hit. PF00400. WD40. 2 hits. [Graphical view]
SMART	SM00320. WD40. 5 hits. [Graphical view]
SUPFAM	SSF50978. WD40_like. 1 hit.
PROSITE	PS00678. WD_REPEATS_1. 2 hits. PS50082. WD_REPEATS_2. 2 hits. PS50294. WD_REPEATS_REGION. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D7LTR3_ARALL

Accession

Primary (citable) accession number: D7LTR3

Entry history

Integrated into UniProtKB/TrEMBL:	August 10, 2010
Last sequence update:	August 10, 2010
Last modified:	March 6, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)